Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31781 | 3' | -59 | NC_006938.1 | + | 24 | 1.11 | 0.000497 |
Target: 5'- cGGUGGCUCGACCACCGUCGACGCGGAg -3' miRNA: 3'- -CCACCGAGCUGGUGGCAGCUGCGCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 59362 | 0.74 | 0.21067 |
Target: 5'- aGGUGGCUcuggcaCGACCAUCGUCGGucCGaCGGu -3' miRNA: 3'- -CCACCGA------GCUGGUGGCAGCU--GC-GCCu -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 60683 | 0.74 | 0.21067 |
Target: 5'- -uUGGCguuGCCACCGUCGAaGCGGAc -3' miRNA: 3'- ccACCGagcUGGUGGCAGCUgCGCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 38410 | 0.73 | 0.256914 |
Target: 5'- cGGUGGCggccUGACCuucaacgucCCGUCGugGCGcGAc -3' miRNA: 3'- -CCACCGa---GCUGGu--------GGCAGCugCGC-CU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 19906 | 0.71 | 0.323734 |
Target: 5'- cGUGGUUggcaugggauacaaCGGCUuccCCGUCGGCGUGGAg -3' miRNA: 3'- cCACCGA--------------GCUGGu--GGCAGCUGCGCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 39543 | 0.71 | 0.325995 |
Target: 5'- cGGUGGCaCGGCCACCGcUCGcACGgucuCGGc -3' miRNA: 3'- -CCACCGaGCUGGUGGC-AGC-UGC----GCCu -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 2756 | 0.71 | 0.35243 |
Target: 5'- cGGUGGUUCcccggcuuccguucgGACCcUCGUCGcCGUGGAg -3' miRNA: 3'- -CCACCGAG---------------CUGGuGGCAGCuGCGCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 57735 | 0.7 | 0.357251 |
Target: 5'- uGUGaGCUCcAUCACgGUCGGgGCGGAc -3' miRNA: 3'- cCAC-CGAGcUGGUGgCAGCUgCGCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 9099 | 0.7 | 0.365386 |
Target: 5'- uGGUGGCggCGGCCugC-UUGGCGCGc- -3' miRNA: 3'- -CCACCGa-GCUGGugGcAGCUGCGCcu -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 7254 | 0.7 | 0.39055 |
Target: 5'- uGUGaGCUCGGCCauucGCCGUCuccaGCGGGa -3' miRNA: 3'- cCAC-CGAGCUGG----UGGCAGcug-CGCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 1548 | 0.7 | 0.39055 |
Target: 5'- uGGgacucGCUCGucacguacgccaACCACC-UCGGCGCGGAg -3' miRNA: 3'- -CCac---CGAGC------------UGGUGGcAGCUGCGCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 49466 | 0.69 | 0.407943 |
Target: 5'- --cGGCaagauccagUCGGCCGCCGUCGACGaCa-- -3' miRNA: 3'- ccaCCG---------AGCUGGUGGCAGCUGC-Gccu -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 3500 | 0.69 | 0.407943 |
Target: 5'- aGUGGCaCGACCAga-UCGACGCGGc -3' miRNA: 3'- cCACCGaGCUGGUggcAGCUGCGCCu -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 57920 | 0.69 | 0.413254 |
Target: 5'- cGGUGGCUUcuggggaaagcccaGGCCaccaccagacgugGCCGUCGACGagaacgugaCGGAg -3' miRNA: 3'- -CCACCGAG--------------CUGG-------------UGGCAGCUGC---------GCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 52200 | 0.69 | 0.444139 |
Target: 5'- uGGUGGCaucuUCGGCgGCCuguuugGUgGAgGCGGAg -3' miRNA: 3'- -CCACCG----AGCUGgUGG------CAgCUgCGCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 15829 | 0.68 | 0.453467 |
Target: 5'- -cUGGCgCGACC-CCG--GACGCGGAc -3' miRNA: 3'- ccACCGaGCUGGuGGCagCUGCGCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 24314 | 0.68 | 0.453467 |
Target: 5'- aGGU-GCUCGACgGCCGcaUCcuggagGACGUGGAg -3' miRNA: 3'- -CCAcCGAGCUGgUGGC--AG------CUGCGCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 58182 | 0.68 | 0.453467 |
Target: 5'- uGGUGGuCUCGuCCGuuuggaagggcgUCGUCGugGCaGGGa -3' miRNA: 3'- -CCACC-GAGCuGGU------------GGCAGCugCG-CCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 54494 | 0.68 | 0.462901 |
Target: 5'- uGGUGGcCUCGACUccgGCCG-CGACagGUGGc -3' miRNA: 3'- -CCACC-GAGCUGG---UGGCaGCUG--CGCCu -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 10771 | 0.68 | 0.466703 |
Target: 5'- cGGUGGCgaggauugccccUCGACCaccuuGCCGuccuccgucacauacUCGGCGgGGAc -3' miRNA: 3'- -CCACCG------------AGCUGG-----UGGC---------------AGCUGCgCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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