miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31781 3' -59 NC_006938.1 + 52883 0.66 0.572421
Target:  5'- --gGGCUCGACC-UCuUCGAC-CGGAu -3'
miRNA:   3'- ccaCCGAGCUGGuGGcAGCUGcGCCU- -5'
31781 3' -59 NC_006938.1 + 34588 0.68 0.491798
Target:  5'- --cGGCUCGACCuGCCGaCGgACGCcGAc -3'
miRNA:   3'- ccaCCGAGCUGG-UGGCaGC-UGCGcCU- -5'
31781 3' -59 NC_006938.1 + 20723 0.67 0.530549
Target:  5'- uGG-GGCUCGACCggaggcaggugucGCUGaUgGAgGCGGAc -3'
miRNA:   3'- -CCaCCGAGCUGG-------------UGGC-AgCUgCGCCU- -5'
31781 3' -59 NC_006938.1 + 47213 0.67 0.531558
Target:  5'- aGUGGUUCcaGAaCAaCGUCGugGCGGAc -3'
miRNA:   3'- cCACCGAG--CUgGUgGCAGCugCGCCU- -5'
31781 3' -59 NC_006938.1 + 42695 0.67 0.545754
Target:  5'- aGGUGGaggggUCGAcaCCACUGUCGAgaccgcgaauagcaGCGGAu -3'
miRNA:   3'- -CCACCg----AGCU--GGUGGCAGCUg-------------CGCCU- -5'
31781 3' -59 NC_006938.1 + 40943 0.67 0.551875
Target:  5'- --cGGCUCGACCcgccCCG-CGAUG-GGAa -3'
miRNA:   3'- ccaCCGAGCUGGu---GGCaGCUGCgCCU- -5'
31781 3' -59 NC_006938.1 + 28639 0.67 0.562123
Target:  5'- gGGU-GCUCGACCACgacaCGugGCuGGAg -3'
miRNA:   3'- -CCAcCGAGCUGGUGgca-GCugCG-CCU- -5'
31781 3' -59 NC_006938.1 + 53441 0.67 0.566236
Target:  5'- cGGUGGCaaguUCGACUucGCCGagauccgcauuggcaUCGucaacuACGCGGAc -3'
miRNA:   3'- -CCACCG----AGCUGG--UGGC---------------AGC------UGCGCCU- -5'
31781 3' -59 NC_006938.1 + 8696 0.66 0.572421
Target:  5'- uGGUGGCuuUCGACCACCuGUCaa---GGAa -3'
miRNA:   3'- -CCACCG--AGCUGGUGG-CAGcugcgCCU- -5'
31781 3' -59 NC_006938.1 + 16129 0.68 0.490821
Target:  5'- cGGcUGGgUCGACCGCUGcCacacccuccucaaGACGCGGc -3'
miRNA:   3'- -CC-ACCgAGCUGGUGGCaG-------------CUGCGCCu -5'
31781 3' -59 NC_006938.1 + 24314 0.68 0.453467
Target:  5'- aGGU-GCUCGACgGCCGcaUCcuggagGACGUGGAg -3'
miRNA:   3'- -CCAcCGAGCUGgUGGC--AG------CUGCGCCU- -5'
31781 3' -59 NC_006938.1 + 52200 0.69 0.444139
Target:  5'- uGGUGGCaucuUCGGCgGCCuguuugGUgGAgGCGGAg -3'
miRNA:   3'- -CCACCG----AGCUGgUGG------CAgCUgCGCCU- -5'
31781 3' -59 NC_006938.1 + 59362 0.74 0.21067
Target:  5'- aGGUGGCUcuggcaCGACCAUCGUCGGucCGaCGGu -3'
miRNA:   3'- -CCACCGA------GCUGGUGGCAGCU--GC-GCCu -5'
31781 3' -59 NC_006938.1 + 38410 0.73 0.256914
Target:  5'- cGGUGGCggccUGACCuucaacgucCCGUCGugGCGcGAc -3'
miRNA:   3'- -CCACCGa---GCUGGu--------GGCAGCugCGC-CU- -5'
31781 3' -59 NC_006938.1 + 19906 0.71 0.323734
Target:  5'- cGUGGUUggcaugggauacaaCGGCUuccCCGUCGGCGUGGAg -3'
miRNA:   3'- cCACCGA--------------GCUGGu--GGCAGCUGCGCCU- -5'
31781 3' -59 NC_006938.1 + 39543 0.71 0.325995
Target:  5'- cGGUGGCaCGGCCACCGcUCGcACGgucuCGGc -3'
miRNA:   3'- -CCACCGaGCUGGUGGC-AGC-UGC----GCCu -5'
31781 3' -59 NC_006938.1 + 57735 0.7 0.357251
Target:  5'- uGUGaGCUCcAUCACgGUCGGgGCGGAc -3'
miRNA:   3'- cCAC-CGAGcUGGUGgCAGCUgCGCCU- -5'
31781 3' -59 NC_006938.1 + 1548 0.7 0.39055
Target:  5'- uGGgacucGCUCGucacguacgccaACCACC-UCGGCGCGGAg -3'
miRNA:   3'- -CCac---CGAGC------------UGGUGGcAGCUGCGCCU- -5'
31781 3' -59 NC_006938.1 + 3500 0.69 0.407943
Target:  5'- aGUGGCaCGACCAga-UCGACGCGGc -3'
miRNA:   3'- cCACCGaGCUGGUggcAGCUGCGCCu -5'
31781 3' -59 NC_006938.1 + 49466 0.69 0.407943
Target:  5'- --cGGCaagauccagUCGGCCGCCGUCGACGaCa-- -3'
miRNA:   3'- ccaCCG---------AGCUGGUGGCAGCUGC-Gccu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.