miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31781 5' -52.9 NC_006938.1 + 59 1.09 0.002451
Target:  5'- cUGUCAACGUGAACGGCGACGGAGACAc -3'
miRNA:   3'- -ACAGUUGCACUUGCCGCUGCCUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 11260 0.77 0.319987
Target:  5'- cGUCGAgGaGGAUGGCGGCGGuGGCGa -3'
miRNA:   3'- aCAGUUgCaCUUGCCGCUGCCuCUGU- -5'
31781 5' -52.9 NC_006938.1 + 27590 0.75 0.396393
Target:  5'- aGUCcuGGCaucGAACGGUGACGGAGACc -3'
miRNA:   3'- aCAG--UUGca-CUUGCCGCUGCCUCUGu -5'
31781 5' -52.9 NC_006938.1 + 48096 0.75 0.405578
Target:  5'- uUGUCgAGCGUGAugccggagGCGGCGAgGGAguuGACAc -3'
miRNA:   3'- -ACAG-UUGCACU--------UGCCGCUgCCU---CUGU- -5'
31781 5' -52.9 NC_006938.1 + 39681 0.74 0.46338
Target:  5'- gGUCAGCGUGccaguGGCGGCGACGucguccGAGAa- -3'
miRNA:   3'- aCAGUUGCAC-----UUGCCGCUGC------CUCUgu -5'
31781 5' -52.9 NC_006938.1 + 61877 0.72 0.554057
Target:  5'- aGUCAGCGgGAccgACGGCGAguuccuccuucucuUGGAGACc -3'
miRNA:   3'- aCAGUUGCaCU---UGCCGCU--------------GCCUCUGu -5'
31781 5' -52.9 NC_006938.1 + 45915 0.72 0.568116
Target:  5'- gGUCcugauCG-GAGCcucGGCGGCGGAGACGg -3'
miRNA:   3'- aCAGuu---GCaCUUG---CCGCUGCCUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 15503 0.72 0.578991
Target:  5'- gGUCGuuCGgca--GGCGACGGAGACGg -3'
miRNA:   3'- aCAGUu-GCacuugCCGCUGCCUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 2358 0.71 0.600865
Target:  5'- aUGUCGugGUGGcCGcGCGAcCGGAacGACAg -3'
miRNA:   3'- -ACAGUugCACUuGC-CGCU-GCCU--CUGU- -5'
31781 5' -52.9 NC_006938.1 + 11563 0.71 0.600865
Target:  5'- cGUCGuguuCGUcGGGCGGCagguGGCGGAGGCc -3'
miRNA:   3'- aCAGUu---GCA-CUUGCCG----CUGCCUCUGu -5'
31781 5' -52.9 NC_006938.1 + 30084 0.71 0.611846
Target:  5'- cGUCGGCGgcaUGGGuCGGUucGGCGGAGGCu -3'
miRNA:   3'- aCAGUUGC---ACUU-GCCG--CUGCCUCUGu -5'
31781 5' -52.9 NC_006938.1 + 40075 0.7 0.644858
Target:  5'- gGUCcaucgccaGACGUGaagccGugGGCGACGGAGGu- -3'
miRNA:   3'- aCAG--------UUGCAC-----UugCCGCUGCCUCUgu -5'
31781 5' -52.9 NC_006938.1 + 23850 0.7 0.677764
Target:  5'- aUGuUCAaacACGaGAACGGCGAC-GAGGCAc -3'
miRNA:   3'- -AC-AGU---UGCaCUUGCCGCUGcCUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 41592 0.69 0.710279
Target:  5'- cGUCAGCaggGAGCGGCugcgcGGCGGccuGGGCAa -3'
miRNA:   3'- aCAGUUGca-CUUGCCG-----CUGCC---UCUGU- -5'
31781 5' -52.9 NC_006938.1 + 57878 0.69 0.73159
Target:  5'- cGUCGACGaGAAC-GUGACGGAG-Cu -3'
miRNA:   3'- aCAGUUGCaCUUGcCGCUGCCUCuGu -5'
31781 5' -52.9 NC_006938.1 + 2821 0.68 0.752503
Target:  5'- cGUCca---GGAUGGCGGCGGAGugGu -3'
miRNA:   3'- aCAGuugcaCUUGCCGCUGCCUCugU- -5'
31781 5' -52.9 NC_006938.1 + 59317 0.68 0.752503
Target:  5'- cGUCGGCGaGGAC-GCGAUGGAGuucGCGg -3'
miRNA:   3'- aCAGUUGCaCUUGcCGCUGCCUC---UGU- -5'
31781 5' -52.9 NC_006938.1 + 48324 0.68 0.75663
Target:  5'- aG-CAGCGUGAcgGCcugaaccccggcucgGGCGGCGGuGACGa -3'
miRNA:   3'- aCaGUUGCACU--UG---------------CCGCUGCCuCUGU- -5'
31781 5' -52.9 NC_006938.1 + 49380 0.68 0.782924
Target:  5'- -aUCGACGauGACGGCGAgcCGGuGGCAu -3'
miRNA:   3'- acAGUUGCacUUGCCGCU--GCCuCUGU- -5'
31781 5' -52.9 NC_006938.1 + 8440 0.68 0.782924
Target:  5'- cGUCAaggagaugACGguGugGGCGACGGAGcCGg -3'
miRNA:   3'- aCAGU--------UGCacUugCCGCUGCCUCuGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.