miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31781 5' -52.9 NC_006938.1 + 59 1.09 0.002451
Target:  5'- cUGUCAACGUGAACGGCGACGGAGACAc -3'
miRNA:   3'- -ACAGUUGCACUUGCCGCUGCCUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 2358 0.71 0.600865
Target:  5'- aUGUCGugGUGGcCGcGCGAcCGGAacGACAg -3'
miRNA:   3'- -ACAGUugCACUuGC-CGCU-GCCU--CUGU- -5'
31781 5' -52.9 NC_006938.1 + 2821 0.68 0.752503
Target:  5'- cGUCca---GGAUGGCGGCGGAGugGu -3'
miRNA:   3'- aCAGuugcaCUUGCCGCUGCCUCugU- -5'
31781 5' -52.9 NC_006938.1 + 6441 0.66 0.880319
Target:  5'- aGUCcggcuCGUGGACaGCGAC-GAGACc -3'
miRNA:   3'- aCAGuu---GCACUUGcCGCUGcCUCUGu -5'
31781 5' -52.9 NC_006938.1 + 8345 0.67 0.811936
Target:  5'- cUGcUCAACGgccagaucugGAucGCGGCGGCGGAcGCGc -3'
miRNA:   3'- -AC-AGUUGCa---------CU--UGCCGCUGCCUcUGU- -5'
31781 5' -52.9 NC_006938.1 + 8440 0.68 0.782924
Target:  5'- cGUCAaggagaugACGguGugGGCGACGGAGcCGg -3'
miRNA:   3'- aCAGU--------UGCacUugCCGCUGCCUCuGU- -5'
31781 5' -52.9 NC_006938.1 + 9369 0.66 0.887793
Target:  5'- gGUCG--GUG-AUGGCGAUGGAGGu- -3'
miRNA:   3'- aCAGUugCACuUGCCGCUGCCUCUgu -5'
31781 5' -52.9 NC_006938.1 + 10152 0.66 0.880319
Target:  5'- gUGUCcGCGUGuuCGGCGuCGaGGGAa- -3'
miRNA:   3'- -ACAGuUGCACuuGCCGCuGC-CUCUgu -5'
31781 5' -52.9 NC_006938.1 + 11260 0.77 0.319987
Target:  5'- cGUCGAgGaGGAUGGCGGCGGuGGCGa -3'
miRNA:   3'- aCAGUUgCaCUUGCCGCUGCCuCUGU- -5'
31781 5' -52.9 NC_006938.1 + 11563 0.71 0.600865
Target:  5'- cGUCGuguuCGUcGGGCGGCagguGGCGGAGGCc -3'
miRNA:   3'- aCAGUu---GCA-CUUGCCG----CUGCCUCUGu -5'
31781 5' -52.9 NC_006938.1 + 15503 0.72 0.578991
Target:  5'- gGUCGuuCGgca--GGCGACGGAGACGg -3'
miRNA:   3'- aCAGUu-GCacuugCCGCUGCCUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 15608 0.66 0.85639
Target:  5'- cGUUGAUccggaaGUGGAUGGCGAUguugcaGGGGACGu -3'
miRNA:   3'- aCAGUUG------CACUUGCCGCUG------CCUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 18347 0.66 0.880319
Target:  5'- gGUCAACGgucggauccacUGcuccuucaaccaGAUGGCGGCGGAcaagGACAa -3'
miRNA:   3'- aCAGUUGC-----------AC------------UUGCCGCUGCCU----CUGU- -5'
31781 5' -52.9 NC_006938.1 + 23232 0.67 0.827641
Target:  5'- cGUCAugGgcggacccuucgagUGGuCGGCGACcGAGGCGg -3'
miRNA:   3'- aCAGUugC--------------ACUuGCCGCUGcCUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 23850 0.7 0.677764
Target:  5'- aUGuUCAaacACGaGAACGGCGAC-GAGGCAc -3'
miRNA:   3'- -AC-AGU---UGCaCUUGCCGCUGcCUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 26330 0.66 0.887793
Target:  5'- cGcCcAUGUGGGCGGCGACacAGGCGu -3'
miRNA:   3'- aCaGuUGCACUUGCCGCUGccUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 26827 0.66 0.864611
Target:  5'- cGUCAagGCGgucaUGAACGGC-ACGaAGACAg -3'
miRNA:   3'- aCAGU--UGC----ACUUGCCGcUGCcUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 27590 0.75 0.396393
Target:  5'- aGUCcuGGCaucGAACGGUGACGGAGACc -3'
miRNA:   3'- aCAG--UUGca-CUUGCCGCUGCCUCUGu -5'
31781 5' -52.9 NC_006938.1 + 27781 0.68 0.792766
Target:  5'- -cUCAACGgagaGAGCGGCGACcccGACAa -3'
miRNA:   3'- acAGUUGCa---CUUGCCGCUGccuCUGU- -5'
31781 5' -52.9 NC_006938.1 + 30084 0.71 0.611846
Target:  5'- cGUCGGCGgcaUGGGuCGGUucGGCGGAGGCu -3'
miRNA:   3'- aCAGUUGC---ACUU-GCCG--CUGCCUCUGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.