Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31781 | 5' | -52.9 | NC_006938.1 | + | 26330 | 0.66 | 0.887793 |
Target: 5'- cGcCcAUGUGGGCGGCGACacAGGCGu -3' miRNA: 3'- aCaGuUGCACUUGCCGCUGccUCUGU- -5' |
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31781 | 5' | -52.9 | NC_006938.1 | + | 62724 | 0.67 | 0.821244 |
Target: 5'- -aUCuuCGUGGACGGCaacuUGGAGGCc -3' miRNA: 3'- acAGuuGCACUUGCCGcu--GCCUCUGu -5' |
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31781 | 5' | -52.9 | NC_006938.1 | + | 23232 | 0.67 | 0.827641 |
Target: 5'- cGUCAugGgcggacccuucgagUGGuCGGCGACcGAGGCGg -3' miRNA: 3'- aCAGUugC--------------ACUuGCCGCUGcCUCUGU- -5' |
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31781 | 5' | -52.9 | NC_006938.1 | + | 61417 | 0.67 | 0.839252 |
Target: 5'- aUGUCGGCGUGGcacCGGCccucgacACGGAG-CAu -3' miRNA: 3'- -ACAGUUGCACUu--GCCGc------UGCCUCuGU- -5' |
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31781 | 5' | -52.9 | NC_006938.1 | + | 63396 | 0.67 | 0.847934 |
Target: 5'- gGUgCAuACGUGGACGGCGAgGuccgcuGGGACu -3' miRNA: 3'- aCA-GU-UGCACUUGCCGCUgC------CUCUGu -5' |
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31781 | 5' | -52.9 | NC_006938.1 | + | 38808 | 0.66 | 0.86217 |
Target: 5'- cGUCcuuCGUGGACGGUGugaccaacuucucuGCaGAGGCAu -3' miRNA: 3'- aCAGuu-GCACUUGCCGC--------------UGcCUCUGU- -5' |
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31781 | 5' | -52.9 | NC_006938.1 | + | 26827 | 0.66 | 0.864611 |
Target: 5'- cGUCAagGCGgucaUGAACGGC-ACGaAGACAg -3' miRNA: 3'- aCAGU--UGC----ACUUGCCGcUGCcUCUGU- -5' |
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31781 | 5' | -52.9 | NC_006938.1 | + | 10152 | 0.66 | 0.880319 |
Target: 5'- gUGUCcGCGUGuuCGGCGuCGaGGGAa- -3' miRNA: 3'- -ACAGuUGCACuuGCCGCuGC-CUCUgu -5' |
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31781 | 5' | -52.9 | NC_006938.1 | + | 18347 | 0.66 | 0.880319 |
Target: 5'- gGUCAACGgucggauccacUGcuccuucaaccaGAUGGCGGCGGAcaagGACAa -3' miRNA: 3'- aCAGUUGC-----------AC------------UUGCCGCUGCCU----CUGU- -5' |
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31781 | 5' | -52.9 | NC_006938.1 | + | 8345 | 0.67 | 0.811936 |
Target: 5'- cUGcUCAACGgccagaucugGAucGCGGCGGCGGAcGCGc -3' miRNA: 3'- -AC-AGUUGCa---------CU--UGCCGCUGCCUcUGU- -5' |
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31781 | 5' | -52.9 | NC_006938.1 | + | 27781 | 0.68 | 0.792766 |
Target: 5'- -cUCAACGgagaGAGCGGCGACcccGACAa -3' miRNA: 3'- acAGUUGCa---CUUGCCGCUGccuCUGU- -5' |
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31781 | 5' | -52.9 | NC_006938.1 | + | 49380 | 0.68 | 0.782924 |
Target: 5'- -aUCGACGauGACGGCGAgcCGGuGGCAu -3' miRNA: 3'- acAGUUGCacUUGCCGCU--GCCuCUGU- -5' |
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31781 | 5' | -52.9 | NC_006938.1 | + | 61877 | 0.72 | 0.554057 |
Target: 5'- aGUCAGCGgGAccgACGGCGAguuccuccuucucuUGGAGACc -3' miRNA: 3'- aCAGUUGCaCU---UGCCGCU--------------GCCUCUGu -5' |
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31781 | 5' | -52.9 | NC_006938.1 | + | 45915 | 0.72 | 0.568116 |
Target: 5'- gGUCcugauCG-GAGCcucGGCGGCGGAGACGg -3' miRNA: 3'- aCAGuu---GCaCUUG---CCGCUGCCUCUGU- -5' |
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31781 | 5' | -52.9 | NC_006938.1 | + | 11563 | 0.71 | 0.600865 |
Target: 5'- cGUCGuguuCGUcGGGCGGCagguGGCGGAGGCc -3' miRNA: 3'- aCAGUu---GCA-CUUGCCG----CUGCCUCUGu -5' |
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31781 | 5' | -52.9 | NC_006938.1 | + | 30084 | 0.71 | 0.611846 |
Target: 5'- cGUCGGCGgcaUGGGuCGGUucGGCGGAGGCu -3' miRNA: 3'- aCAGUUGC---ACUU-GCCG--CUGCCUCUGu -5' |
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31781 | 5' | -52.9 | NC_006938.1 | + | 23850 | 0.7 | 0.677764 |
Target: 5'- aUGuUCAaacACGaGAACGGCGAC-GAGGCAc -3' miRNA: 3'- -AC-AGU---UGCaCUUGCCGCUGcCUCUGU- -5' |
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31781 | 5' | -52.9 | NC_006938.1 | + | 59317 | 0.68 | 0.752503 |
Target: 5'- cGUCGGCGaGGAC-GCGAUGGAGuucGCGg -3' miRNA: 3'- aCAGUUGCaCUUGcCGCUGCCUC---UGU- -5' |
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31781 | 5' | -52.9 | NC_006938.1 | + | 48324 | 0.68 | 0.75663 |
Target: 5'- aG-CAGCGUGAcgGCcugaaccccggcucgGGCGGCGGuGACGa -3' miRNA: 3'- aCaGUUGCACU--UG---------------CCGCUGCCuCUGU- -5' |
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31781 | 5' | -52.9 | NC_006938.1 | + | 8440 | 0.68 | 0.782924 |
Target: 5'- cGUCAaggagaugACGguGugGGCGACGGAGcCGg -3' miRNA: 3'- aCAGU--------UGCacUugCCGCUGCCUCuGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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