Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31782 | 3' | -58.8 | NC_006938.1 | + | 1327 | 1.1 | 0.000446 |
Target: 5'- gGCAUCGCCUUGGCAGCAAGGCCGCCGu -3' miRNA: 3'- -CGUAGCGGAACCGUCGUUCCGGCGGC- -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 6785 | 0.77 | 0.116938 |
Target: 5'- -gGUCGC--UGGCGGCGAGGCCaagGCCGa -3' miRNA: 3'- cgUAGCGgaACCGUCGUUCCGG---CGGC- -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 58159 | 0.75 | 0.157521 |
Target: 5'- gGCGUCGUCgUGGCAGgGAGGgCGuuGa -3' miRNA: 3'- -CGUAGCGGaACCGUCgUUCCgGCggC- -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 30844 | 0.73 | 0.205036 |
Target: 5'- -gGUCGCCgaGGUcucuggGGCAcuGGCCGCCGa -3' miRNA: 3'- cgUAGCGGaaCCG------UCGUu-CCGGCGGC- -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 24646 | 0.73 | 0.210417 |
Target: 5'- cGCAUgGCCUcUGGCAGCGcgcGGCgGCgGa -3' miRNA: 3'- -CGUAgCGGA-ACCGUCGUu--CCGgCGgC- -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 15443 | 0.73 | 0.215919 |
Target: 5'- cGCGUCGUCgu-GCAGauguGGGCCGCUGg -3' miRNA: 3'- -CGUAGCGGaacCGUCgu--UCCGGCGGC- -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 63446 | 0.72 | 0.257952 |
Target: 5'- -gAUCGCCaaGGCGGUGaagcAGGCCGCUc -3' miRNA: 3'- cgUAGCGGaaCCGUCGU----UCCGGCGGc -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 33663 | 0.71 | 0.277924 |
Target: 5'- ----aGCCggUGGCGGCAcGGuuGCCGa -3' miRNA: 3'- cguagCGGa-ACCGUCGUuCCggCGGC- -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 5519 | 0.71 | 0.299109 |
Target: 5'- ---cCGCCgcUGGCAGCAaugccaAGGCCGUCc -3' miRNA: 3'- cguaGCGGa-ACCGUCGU------UCCGGCGGc -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 60431 | 0.7 | 0.306443 |
Target: 5'- -gGUUGCCUgcagaGGC-GCugAGGGCCGCCGc -3' miRNA: 3'- cgUAGCGGAa----CCGuCG--UUCCGGCGGC- -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 17380 | 0.7 | 0.329267 |
Target: 5'- gGCGUCGUggaUGGCcuuGGCAAuGGCCGCgCGg -3' miRNA: 3'- -CGUAGCGga-ACCG---UCGUU-CCGGCG-GC- -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 38039 | 0.7 | 0.345168 |
Target: 5'- aGCA-CGCCgagcggaUGGC--CAAGGCCGCUGg -3' miRNA: 3'- -CGUaGCGGa------ACCGucGUUCCGGCGGC- -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 37527 | 0.7 | 0.345168 |
Target: 5'- ---cCGCCgcUGGCaAGCuggacGAGGCCGCCa -3' miRNA: 3'- cguaGCGGa-ACCG-UCG-----UUCCGGCGGc -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 51505 | 0.69 | 0.353323 |
Target: 5'- gGCAUUGUUggcagcGGCGGCGAuGGCCgGCCa -3' miRNA: 3'- -CGUAGCGGaa----CCGUCGUU-CCGG-CGGc -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 28920 | 0.69 | 0.356623 |
Target: 5'- uGCAcgagCGCCggaaGGCGGagucaacaagaggcuCGAGGCCGCUGg -3' miRNA: 3'- -CGUa---GCGGaa--CCGUC---------------GUUCCGGCGGC- -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 11508 | 0.68 | 0.414125 |
Target: 5'- --uUCGCga-GGCGcGCAAGGCgGCCGa -3' miRNA: 3'- cguAGCGgaaCCGU-CGUUCCGgCGGC- -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 62599 | 0.68 | 0.432643 |
Target: 5'- uGUGUCGC---GGCgAGCGAGGUCGuCCGg -3' miRNA: 3'- -CGUAGCGgaaCCG-UCGUUCCGGC-GGC- -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 51981 | 0.67 | 0.470092 |
Target: 5'- uGCAgCGCCacUGGCGGCGAcagaguucugguuGGCCGUg- -3' miRNA: 3'- -CGUaGCGGa-ACCGUCGUU-------------CCGGCGgc -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 51478 | 0.67 | 0.471074 |
Target: 5'- cGCGgccggaGCCggGGCAGuCGAGGCgaucguCGCCGc -3' miRNA: 3'- -CGUag----CGGaaCCGUC-GUUCCG------GCGGC- -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 39677 | 0.67 | 0.480951 |
Target: 5'- aGCGU-GCCagUGGCGGCGAcGUCGuCCGa -3' miRNA: 3'- -CGUAgCGGa-ACCGUCGUUcCGGC-GGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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