miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31782 5' -53.3 NC_006938.1 + 30949 0.66 0.851465
Target:  5'- gCUCGGGGUCGucggcggccaguGCCCCAgAGACc-UCg- -3'
miRNA:   3'- -GAGCCCUAGU------------UGGGGU-UCUGucAGau -5'
31782 5' -53.3 NC_006938.1 + 36217 0.66 0.842775
Target:  5'- aUCGGGucaCGACCCCAGcGuCAGUUc- -3'
miRNA:   3'- gAGCCCua-GUUGGGGUU-CuGUCAGau -5'
31782 5' -53.3 NC_006938.1 + 11548 0.66 0.833857
Target:  5'- aUUGGGAUCcuuCCCCGgaaaggucgucAGGCAGUUc- -3'
miRNA:   3'- gAGCCCUAGuu-GGGGU-----------UCUGUCAGau -5'
31782 5' -53.3 NC_006938.1 + 9686 0.66 0.833857
Target:  5'- -gCGGGAgUCAGCCCCGAcGACGa---- -3'
miRNA:   3'- gaGCCCU-AGUUGGGGUU-CUGUcagau -5'
31782 5' -53.3 NC_006938.1 + 55639 0.67 0.77004
Target:  5'- aUCGGGAuggcagugccauacgUCGACgCCGAGACGGa--- -3'
miRNA:   3'- gAGCCCU---------------AGUUGgGGUUCUGUCagau -5'
31782 5' -53.3 NC_006938.1 + 26125 0.69 0.646855
Target:  5'- -aCGGGAUCcACCCUggccuGGGCAGUgCUGu -3'
miRNA:   3'- gaGCCCUAGuUGGGGu----UCUGUCA-GAU- -5'
31782 5' -53.3 NC_006938.1 + 34929 0.69 0.645743
Target:  5'- cCUCGGGGUUGGCCCCGAuccacguGGCGaugugccucaguGUCUGc -3'
miRNA:   3'- -GAGCCCUAGUUGGGGUU-------CUGU------------CAGAU- -5'
31782 5' -53.3 NC_006938.1 + 5209 0.71 0.558248
Target:  5'- --gGGGcgCGGCCCaCAGGGgAGUCUAg -3'
miRNA:   3'- gagCCCuaGUUGGG-GUUCUgUCAGAU- -5'
31782 5' -53.3 NC_006938.1 + 34849 0.72 0.50453
Target:  5'- aUCGGGGcCAACCCCGAGGaggugguGGUCa- -3'
miRNA:   3'- gAGCCCUaGUUGGGGUUCUg------UCAGau -5'
31782 5' -53.3 NC_006938.1 + 1364 1.07 0.002516
Target:  5'- gCUCGGGAUCAACCCCAAGACAGUCUAc -3'
miRNA:   3'- -GAGCCCUAGUUGGGGUUCUGUCAGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.