miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31783 3' -51.4 NC_006938.1 + 18649 0.66 0.911751
Target:  5'- gCGAAgUGCACGAGCauccucGGcuccugCUGGGAg -3'
miRNA:   3'- gGUUUgACGUGUUCG------CCaa----GACCCUg -5'
31783 3' -51.4 NC_006938.1 + 57349 0.66 0.905061
Target:  5'- ----cCUGCGCGAGCGGcUCgaGGGcCu -3'
miRNA:   3'- gguuuGACGUGUUCGCCaAGa-CCCuG- -5'
31783 3' -51.4 NC_006938.1 + 27211 0.66 0.897376
Target:  5'- cCCAGACcugcccgUGCACcaccacgaAGGCGuGgcCUGGGACc -3'
miRNA:   3'- -GGUUUG-------ACGUG--------UUCGC-CaaGACCCUG- -5'
31783 3' -51.4 NC_006938.1 + 52242 0.67 0.890838
Target:  5'- aCCGAggagcuGCUGCAgGAGCuGGUUggcugccagCUGGGuCa -3'
miRNA:   3'- -GGUU------UGACGUgUUCG-CCAA---------GACCCuG- -5'
31783 3' -51.4 NC_006938.1 + 32830 0.67 0.85915
Target:  5'- gCCAAGCUGgcCGCGuGGCucgaGGgcagCUGGGACa -3'
miRNA:   3'- -GGUUUGAC--GUGU-UCG----CCaa--GACCCUG- -5'
31783 3' -51.4 NC_006938.1 + 4350 0.68 0.832764
Target:  5'- gCCGAGCUGCgaaggcagacggACAAGaCGGUcgUCUGGuGuCg -3'
miRNA:   3'- -GGUUUGACG------------UGUUC-GCCA--AGACC-CuG- -5'
31783 3' -51.4 NC_006938.1 + 31824 0.69 0.774343
Target:  5'- cUCGAGCUGCugGAGCGGgagCUGu--- -3'
miRNA:   3'- -GGUUUGACGugUUCGCCaa-GACccug -5'
31783 3' -51.4 NC_006938.1 + 2523 0.69 0.774343
Target:  5'- uCCGAGC-GUACAAGaUGGgagcuccCUGGGACu -3'
miRNA:   3'- -GGUUUGaCGUGUUC-GCCaa-----GACCCUG- -5'
31783 3' -51.4 NC_006938.1 + 9268 0.71 0.67721
Target:  5'- cCCAu-CUGCGCGccacGGCGGUggccagagCUGGcGACg -3'
miRNA:   3'- -GGUuuGACGUGU----UCGCCAa-------GACC-CUG- -5'
31783 3' -51.4 NC_006938.1 + 4605 0.71 0.643597
Target:  5'- cUCAGACUGCGCAGGCaGU-CgGaGGACc -3'
miRNA:   3'- -GGUUUGACGUGUUCGcCAaGaC-CCUG- -5'
31783 3' -51.4 NC_006938.1 + 27113 0.72 0.587493
Target:  5'- gCCAcGCcuucgugguggUGCACGGGCaGG-UCUGGGACc -3'
miRNA:   3'- -GGUuUG-----------ACGUGUUCG-CCaAGACCCUG- -5'
31783 3' -51.4 NC_006938.1 + 33266 0.73 0.554219
Target:  5'- uCCGGGCUGCACcguGCGGgUC-GGGAa -3'
miRNA:   3'- -GGUUUGACGUGuu-CGCCaAGaCCCUg -5'
31783 3' -51.4 NC_006938.1 + 51466 0.73 0.543246
Target:  5'- cUCGAACUGCugGAGCGGc---GGGAa -3'
miRNA:   3'- -GGUUUGACGugUUCGCCaagaCCCUg -5'
31783 3' -51.4 NC_006938.1 + 46632 0.73 0.532345
Target:  5'- uUCGuccCUGcCACAGGUGGUggcCUGGGACu -3'
miRNA:   3'- -GGUuu-GAC-GUGUUCGCCAa--GACCCUG- -5'
31783 3' -51.4 NC_006938.1 + 59209 0.79 0.283247
Target:  5'- aCGuuCUGCugGAgGCGGUUCUGGcGGCg -3'
miRNA:   3'- gGUuuGACGugUU-CGCCAAGACC-CUG- -5'
31783 3' -51.4 NC_006938.1 + 1527 1.13 0.001632
Target:  5'- aCCAAACUGCACAAGCGGUUCUGGGACu -3'
miRNA:   3'- -GGUUUGACGUGUUCGCCAAGACCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.