miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31783 5' -58.7 NC_006938.1 + 1564 1.11 0.000413
Target:  5'- cGUACGCCAACCACCUCGGCGCGGAGCu -3'
miRNA:   3'- -CAUGCGGUUGGUGGAGCCGCGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 47720 0.79 0.08825
Target:  5'- gGUACGCUGcACCACCUcCGGUGCcGAGCg -3'
miRNA:   3'- -CAUGCGGU-UGGUGGA-GCCGCGcCUCG- -5'
31783 5' -58.7 NC_006938.1 + 39230 0.79 0.095855
Target:  5'- -gACGCCuggcguuCCACCUCGGUcgggaccuugGCGGAGCc -3'
miRNA:   3'- caUGCGGuu-----GGUGGAGCCG----------CGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 60614 0.75 0.177981
Target:  5'- -aACGCCAACUucGCCaUCGGgGCGGcgAGCu -3'
miRNA:   3'- caUGCGGUUGG--UGG-AGCCgCGCC--UCG- -5'
31783 5' -58.7 NC_006938.1 + 9095 0.74 0.182696
Target:  5'- -gGCGgCGGCCugCUUGGCGCgcuccaugauGGAGCc -3'
miRNA:   3'- caUGCgGUUGGugGAGCCGCG----------CCUCG- -5'
31783 5' -58.7 NC_006938.1 + 20939 0.74 0.194463
Target:  5'- -gACGCCGaggucucggGCCACCUCGcgcugugucuugcccGCGCGGcGGCg -3'
miRNA:   3'- caUGCGGU---------UGGUGGAGC---------------CGCGCC-UCG- -5'
31783 5' -58.7 NC_006938.1 + 11054 0.74 0.202151
Target:  5'- ---aGCCGAUCuccaugauggaguACCUCGGCGCgcuGGAGCg -3'
miRNA:   3'- caugCGGUUGG-------------UGGAGCCGCG---CCUCG- -5'
31783 5' -58.7 NC_006938.1 + 48488 0.72 0.261003
Target:  5'- uGUAgGCCGugGCCGCCUCGauCGUGGAGa -3'
miRNA:   3'- -CAUgCGGU--UGGUGGAGCc-GCGCCUCg -5'
31783 5' -58.7 NC_006938.1 + 61407 0.72 0.274196
Target:  5'- -aACGCaGACCAUgUCGGCGUGGcaccGGCc -3'
miRNA:   3'- caUGCGgUUGGUGgAGCCGCGCC----UCG- -5'
31783 5' -58.7 NC_006938.1 + 9163 0.71 0.294978
Target:  5'- aGUGCGUCGccagcucugGCCACCgccgUGGCGCGcagauGGGCg -3'
miRNA:   3'- -CAUGCGGU---------UGGUGGa---GCCGCGC-----CUCG- -5'
31783 5' -58.7 NC_006938.1 + 21262 0.71 0.302173
Target:  5'- --cCGCCGACCcgucGCUguUCGaCGCGGAGCg -3'
miRNA:   3'- cauGCGGUUGG----UGG--AGCcGCGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 42438 0.7 0.34817
Target:  5'- -gACGCCuGCCAcucCCUCGGC-CGGAa- -3'
miRNA:   3'- caUGCGGuUGGU---GGAGCCGcGCCUcg -5'
31783 5' -58.7 NC_006938.1 + 34543 0.7 0.36208
Target:  5'- -gGCGCCAACCugcaggacgagcagGCCagGGU-CGGAGCg -3'
miRNA:   3'- caUGCGGUUGG--------------UGGagCCGcGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 33166 0.7 0.367081
Target:  5'- uUGCGCCAGCCAUaccaCUCGGCcacccuguacaggucGCcacggacGGAGCu -3'
miRNA:   3'- cAUGCGGUUGGUG----GAGCCG---------------CG-------CCUCG- -5'
31783 5' -58.7 NC_006938.1 + 9869 0.7 0.372129
Target:  5'- cGUACGgcauuCCGAgCGCCUCGGCcgcguugGCGaGGGCu -3'
miRNA:   3'- -CAUGC-----GGUUgGUGGAGCCG-------CGC-CUCG- -5'
31783 5' -58.7 NC_006938.1 + 8110 0.7 0.372974
Target:  5'- cUugGCCuccgugaagaAGCCACCUCccaugacgGGCG-GGAGCu -3'
miRNA:   3'- cAugCGG----------UUGGUGGAG--------CCGCgCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 30929 0.69 0.386686
Target:  5'- aGUGCcCCAGagACCUCGGCGaccuccuccaggaGGAGCu -3'
miRNA:   3'- -CAUGcGGUUggUGGAGCCGCg------------CCUCG- -5'
31783 5' -58.7 NC_006938.1 + 48022 0.69 0.398953
Target:  5'- -cACGCuCGACaagACCUcgggCGGCGCGGAcgGCa -3'
miRNA:   3'- caUGCG-GUUGg--UGGA----GCCGCGCCU--CG- -5'
31783 5' -58.7 NC_006938.1 + 41543 0.69 0.407866
Target:  5'- -aGCcCCGGCCAacuUCUCGGUGgUGGAGCc -3'
miRNA:   3'- caUGcGGUUGGU---GGAGCCGC-GCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 23653 0.69 0.407866
Target:  5'- -cGCGaggaCCAGCUugucguagACCUCGGUGCGGAauGCc -3'
miRNA:   3'- caUGC----GGUUGG--------UGGAGCCGCGCCU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.