miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31783 5' -58.7 NC_006938.1 + 28 0.68 0.42606
Target:  5'- ---gGCuCGACCACCgUCGaCGCGGAGa -3'
miRNA:   3'- caugCG-GUUGGUGG-AGCcGCGCCUCg -5'
31783 5' -58.7 NC_006938.1 + 1564 1.11 0.000413
Target:  5'- cGUACGCCAACCACCUCGGCGCGGAGCu -3'
miRNA:   3'- -CAUGCGGUUGGUGGAGCCGCGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 1824 0.67 0.503313
Target:  5'- -gGgGCCAGuuGCCacCGGC-CGGAGCu -3'
miRNA:   3'- caUgCGGUUggUGGa-GCCGcGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 3920 0.68 0.435337
Target:  5'- cGUGgGCCucguucaaGACCuACUUCGGCGUGuGGCg -3'
miRNA:   3'- -CAUgCGG--------UUGG-UGGAGCCGCGCcUCG- -5'
31783 5' -58.7 NC_006938.1 + 7222 0.68 0.454233
Target:  5'- -aGCGCUcgGACCGCUcCGGa-CGGAGCu -3'
miRNA:   3'- caUGCGG--UUGGUGGaGCCgcGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 8110 0.7 0.372974
Target:  5'- cUugGCCuccgugaagaAGCCACCUCccaugacgGGCG-GGAGCu -3'
miRNA:   3'- cAugCGG----------UUGGUGGAG--------CCGCgCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 9095 0.74 0.182696
Target:  5'- -gGCGgCGGCCugCUUGGCGCgcuccaugauGGAGCc -3'
miRNA:   3'- caUGCgGUUGGugGAGCCGCG----------CCUCG- -5'
31783 5' -58.7 NC_006938.1 + 9163 0.71 0.294978
Target:  5'- aGUGCGUCGccagcucugGCCACCgccgUGGCGCGcagauGGGCg -3'
miRNA:   3'- -CAUGCGGU---------UGGUGGa---GCCGCGC-----CUCG- -5'
31783 5' -58.7 NC_006938.1 + 9869 0.7 0.372129
Target:  5'- cGUACGgcauuCCGAgCGCCUCGGCcgcguugGCGaGGGCu -3'
miRNA:   3'- -CAUGC-----GGUUgGUGGAGCCG-------CGC-CUCG- -5'
31783 5' -58.7 NC_006938.1 + 10411 0.66 0.575503
Target:  5'- gGUGCaGCCcuuggcACCGCCcucccaGGCGCGGaAGUa -3'
miRNA:   3'- -CAUG-CGGu-----UGGUGGag----CCGCGCC-UCG- -5'
31783 5' -58.7 NC_006938.1 + 11054 0.74 0.202151
Target:  5'- ---aGCCGAUCuccaugauggaguACCUCGGCGCgcuGGAGCg -3'
miRNA:   3'- caugCGGUUGG-------------UGGAGCCGCG---CCUCG- -5'
31783 5' -58.7 NC_006938.1 + 11599 0.67 0.533843
Target:  5'- -gAUGUCGGCCGCCUUGcGCGCcucGCg -3'
miRNA:   3'- caUGCGGUUGGUGGAGC-CGCGccuCG- -5'
31783 5' -58.7 NC_006938.1 + 11966 0.66 0.554558
Target:  5'- --gUGCC-ACCGCCUCagccGCGUgugGGAGCu -3'
miRNA:   3'- cauGCGGuUGGUGGAGc---CGCG---CCUCG- -5'
31783 5' -58.7 NC_006938.1 + 12618 0.66 0.586045
Target:  5'- -cAgGCCuGCCggaACCUCGG-GCcGGGGCu -3'
miRNA:   3'- caUgCGGuUGG---UGGAGCCgCG-CCUCG- -5'
31783 5' -58.7 NC_006938.1 + 15173 0.69 0.416903
Target:  5'- gGUACGCgAG--ACCUCGGgGCaGGGCg -3'
miRNA:   3'- -CAUGCGgUUggUGGAGCCgCGcCUCG- -5'
31783 5' -58.7 NC_006938.1 + 17200 0.67 0.493303
Target:  5'- gGUGgGCCAgcuggucuGCCACCUC--CGCGaGGGCa -3'
miRNA:   3'- -CAUgCGGU--------UGGUGGAGccGCGC-CUCG- -5'
31783 5' -58.7 NC_006938.1 + 18696 0.69 0.407866
Target:  5'- gGUACuUCugcGCCGCCUCGGaCGCGccGGGCa -3'
miRNA:   3'- -CAUGcGGu--UGGUGGAGCC-GCGC--CUCG- -5'
31783 5' -58.7 NC_006938.1 + 19729 0.69 0.416903
Target:  5'- ---gGaCCAGCCACCgcugcccgacgCGGUGCGGAagGCg -3'
miRNA:   3'- caugC-GGUUGGUGGa----------GCCGCGCCU--CG- -5'
31783 5' -58.7 NC_006938.1 + 19829 0.67 0.503313
Target:  5'- -aGCGCCuuccgcACCGCgUCGGgcaGCGGuGGCu -3'
miRNA:   3'- caUGCGGu-----UGGUGgAGCCg--CGCC-UCG- -5'
31783 5' -58.7 NC_006938.1 + 19925 0.66 0.554558
Target:  5'- -aACGgCuuCC-CCgUCGGCGUGGAGg -3'
miRNA:   3'- caUGCgGuuGGuGG-AGCCGCGCCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.