miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31784 5' -54 NC_006938.1 + 17553 0.66 0.851042
Target:  5'- gCGACaugagaaCGGCGACAAccuGGACGcGGCc -3'
miRNA:   3'- gGCUGgag----GCUGCUGUU---CCUGUuCCG- -5'
31784 5' -54 NC_006938.1 + 24637 0.66 0.839173
Target:  5'- aCGACC-CCGgccACGGCAugaaguucaagauGGACcGGGCc -3'
miRNA:   3'- gGCUGGaGGC---UGCUGUu------------CCUGuUCCG- -5'
31784 5' -54 NC_006938.1 + 20728 0.66 0.862478
Target:  5'- cUCGACCggaggcaggugucgCUGAUGGaggcGGACAAGGUg -3'
miRNA:   3'- -GGCUGGa-------------GGCUGCUguu-CCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 26563 0.66 0.842607
Target:  5'- aCG-CCaCCGA-GGCGAaccuGGACAAGGCc -3'
miRNA:   3'- gGCuGGaGGCUgCUGUU----CCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 45157 0.66 0.851042
Target:  5'- uCUGACUUCUGcgacCGACAuuGuCGAGGCa -3'
miRNA:   3'- -GGCUGGAGGCu---GCUGUucCuGUUCCG- -5'
31784 5' -54 NC_006938.1 + 47604 0.66 0.842607
Target:  5'- aCCGGCgUCaCGGCGACc-GGAUAcacgcucGGCa -3'
miRNA:   3'- -GGCUGgAG-GCUGCUGuuCCUGUu------CCG- -5'
31784 5' -54 NC_006938.1 + 21694 0.66 0.83396
Target:  5'- cCCGGCuCUCUgagauaGACGACcuGGACcagcacgggGAGGUg -3'
miRNA:   3'- -GGCUG-GAGG------CUGCUGuuCCUG---------UUCCG- -5'
31784 5' -54 NC_006938.1 + 34591 0.66 0.859256
Target:  5'- cUCGACCUgCCGACGGacgccgacgcCAAguacaucggaguGGACAgcucuGGGCu -3'
miRNA:   3'- -GGCUGGA-GGCUGCU----------GUU------------CCUGU-----UCCG- -5'
31784 5' -54 NC_006938.1 + 37778 0.66 0.842607
Target:  5'- gCCGAucgcaUCUUCGAgGuccGCGAGGACGAcGGUg -3'
miRNA:   3'- -GGCU-----GGAGGCUgC---UGUUCCUGUU-CCG- -5'
31784 5' -54 NC_006938.1 + 21380 0.66 0.841752
Target:  5'- gCUGGCCgagCCGGuccgggUGACAAgccccucGGAgGAGGCg -3'
miRNA:   3'- -GGCUGGa--GGCU------GCUGUU-------CCUgUUCCG- -5'
31784 5' -54 NC_006938.1 + 52557 0.66 0.83396
Target:  5'- aUGGCgUUCGACGA----GACAAGGCu -3'
miRNA:   3'- gGCUGgAGGCUGCUguucCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 36989 0.66 0.84516
Target:  5'- aCGGCUcugauccucaugcugUCCGAgGuCAGGGACAGccggaccGGCg -3'
miRNA:   3'- gGCUGG---------------AGGCUgCuGUUCCUGUU-------CCG- -5'
31784 5' -54 NC_006938.1 + 43422 0.66 0.851042
Target:  5'- -aGGCCUccCCGugGgagGCGGGGACAuacgcggucGGCg -3'
miRNA:   3'- ggCUGGA--GGCugC---UGUUCCUGUu--------CCG- -5'
31784 5' -54 NC_006938.1 + 14621 0.66 0.859256
Target:  5'- gCUGGCUgCCGACGGucGGGAaccuCGAGGUc -3'
miRNA:   3'- -GGCUGGaGGCUGCUguUCCU----GUUCCG- -5'
31784 5' -54 NC_006938.1 + 18040 0.66 0.859256
Target:  5'- gCGGCgUCaagGuCGACGAGGACc-GGCu -3'
miRNA:   3'- gGCUGgAGg--CuGCUGUUCCUGuuCCG- -5'
31784 5' -54 NC_006938.1 + 13182 0.66 0.851042
Target:  5'- cCCGGCaccaCCGG-GAguGGGACAGGcGCg -3'
miRNA:   3'- -GGCUGga--GGCUgCUguUCCUGUUC-CG- -5'
31784 5' -54 NC_006938.1 + 9871 0.66 0.859256
Target:  5'- -aGGCCUCCGuCGAgCuggcccAGGAgaAGGGCg -3'
miRNA:   3'- ggCUGGAGGCuGCU-Gu-----UCCUg-UUCCG- -5'
31784 5' -54 NC_006938.1 + 11564 0.66 0.83396
Target:  5'- gUCGugUucgUCgGGCGGCAGGuGGCgGAGGCc -3'
miRNA:   3'- -GGCugG---AGgCUGCUGUUC-CUG-UUCCG- -5'
31784 5' -54 NC_006938.1 + 51962 0.66 0.859256
Target:  5'- cCCGAUCUgCCgcgaagGACGugGAGGACcucGCa -3'
miRNA:   3'- -GGCUGGA-GG------CUGCugUUCCUGuucCG- -5'
31784 5' -54 NC_006938.1 + 1709 0.66 0.842607
Target:  5'- cCCGuacAUCUgCGACGACGccauGGACAGcuccGGCc -3'
miRNA:   3'- -GGC---UGGAgGCUGCUGUu---CCUGUU----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.