Results 1 - 20 of 112 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31784 | 5' | -54 | NC_006938.1 | + | 1661 | 1.13 | 0.001133 |
Target: 5'- gCCGACCUCCGACGACAAGGACAAGGCc -3' miRNA: 3'- -GGCUGGAGGCUGCUGUUCCUGUUCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 40516 | 0.82 | 0.149346 |
Target: 5'- uCCGAUC-CgGACGACGAGGACGucGGCg -3' miRNA: 3'- -GGCUGGaGgCUGCUGUUCCUGUu-CCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 20129 | 0.81 | 0.153435 |
Target: 5'- -gGGCCUCCGACaaccaGCGcuGGGACGAGGCg -3' miRNA: 3'- ggCUGGAGGCUGc----UGU--UCCUGUUCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 22547 | 0.8 | 0.202309 |
Target: 5'- gCCcACCUCCG-CGACAAGGugcugguccacgccaACGAGGCa -3' miRNA: 3'- -GGcUGGAGGCuGCUGUUCC---------------UGUUCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 10741 | 0.76 | 0.315395 |
Target: 5'- gCCGuCCUCCGucacauacuCGGCGGGGACGuAGGUc -3' miRNA: 3'- -GGCuGGAGGCu--------GCUGUUCCUGU-UCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 45990 | 0.75 | 0.363573 |
Target: 5'- uCCGAUCaggaccucgaagUCCGcCGucaGCGAGGACAGGGCc -3' miRNA: 3'- -GGCUGG------------AGGCuGC---UGUUCCUGUUCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 10388 | 0.75 | 0.372083 |
Target: 5'- uCCGAUga-CGACGACcagucgaacaucGAGGGCGAGGCg -3' miRNA: 3'- -GGCUGgagGCUGCUG------------UUCCUGUUCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 6807 | 0.75 | 0.372083 |
Target: 5'- gCCGACCUguccaCGGuCGACAAGGcCGAGGg -3' miRNA: 3'- -GGCUGGAg----GCU-GCUGUUCCuGUUCCg -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 32191 | 0.75 | 0.372083 |
Target: 5'- uCCuGCCUCCGAUGGCGAGGu--GGGa -3' miRNA: 3'- -GGcUGGAGGCUGCUGUUCCuguUCCg -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 19926 | 0.74 | 0.407452 |
Target: 5'- aCGGCUUCCccgucGGCGugGAGGACuccaggGAGGCc -3' miRNA: 3'- gGCUGGAGG-----CUGCugUUCCUG------UUCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 2646 | 0.74 | 0.415695 |
Target: 5'- gCGGCCUCCacGGCGACGAGGGuccgaacggaagcCGGGGa -3' miRNA: 3'- gGCUGGAGG--CUGCUGUUCCU-------------GUUCCg -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 48033 | 0.74 | 0.416617 |
Target: 5'- -aGACCUCgGGCGGCGcGGAC--GGCa -3' miRNA: 3'- ggCUGGAGgCUGCUGUuCCUGuuCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 6998 | 0.74 | 0.416617 |
Target: 5'- aCGGCC-CCGGCuggggaGGCAAGGcCGGGGCc -3' miRNA: 3'- gGCUGGaGGCUG------CUGUUCCuGUUCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 7537 | 0.74 | 0.425908 |
Target: 5'- uCCGGCuCUUCGGCuacGCGGGGAC-GGGCa -3' miRNA: 3'- -GGCUG-GAGGCUGc--UGUUCCUGuUCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 48789 | 0.74 | 0.43532 |
Target: 5'- gUCGACUcaaCGugGAgcAGGACGAGGCa -3' miRNA: 3'- -GGCUGGag-GCugCUguUCCUGUUCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 57957 | 0.73 | 0.444852 |
Target: 5'- uCUGGCUUCCagGACGGguGGGACGGcGGCu -3' miRNA: 3'- -GGCUGGAGG--CUGCUguUCCUGUU-CCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 53367 | 0.73 | 0.4545 |
Target: 5'- aCCGGCCucUCCGuuGACAAccuGGACGuccuGGGCu -3' miRNA: 3'- -GGCUGG--AGGCugCUGUU---CCUGU----UCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 39576 | 0.73 | 0.4545 |
Target: 5'- aCCGAgCUUCCGACGACGAuuugucuuGAC-AGGCu -3' miRNA: 3'- -GGCU-GGAGGCUGCUGUUc-------CUGuUCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 31036 | 0.72 | 0.494172 |
Target: 5'- uCUGGCCg-CGugGAgAAGGGCGAcGGCu -3' miRNA: 3'- -GGCUGGagGCugCUgUUCCUGUU-CCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 33018 | 0.71 | 0.556392 |
Target: 5'- uCUGACUUCCagGACaGCGAGGGCA-GGUg -3' miRNA: 3'- -GGCUGGAGG--CUGcUGUUCCUGUuCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home