miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31784 5' -54 NC_006938.1 + 1433 0.7 0.62067
Target:  5'- cCCGAgcUCUCUGGCGACGGcGGccuugcugcCAAGGCg -3'
miRNA:   3'- -GGCU--GGAGGCUGCUGUU-CCu--------GUUCCG- -5'
31784 5' -54 NC_006938.1 + 1661 1.13 0.001133
Target:  5'- gCCGACCUCCGACGACAAGGACAAGGCc -3'
miRNA:   3'- -GGCUGGAGGCUGCUGUUCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 1709 0.66 0.842607
Target:  5'- cCCGuacAUCUgCGACGACGccauGGACAGcuccGGCc -3'
miRNA:   3'- -GGC---UGGAgGCUGCUGUu---CCUGUU----CCG- -5'
31784 5' -54 NC_006938.1 + 2646 0.74 0.415695
Target:  5'- gCGGCCUCCacGGCGACGAGGGuccgaacggaagcCGGGGa -3'
miRNA:   3'- gGCUGGAGG--CUGCUGUUCCU-------------GUUCCg -5'
31784 5' -54 NC_006938.1 + 2733 0.69 0.674564
Target:  5'- aCGACCacUCCGcCGcCAuccuGGACGGGGUc -3'
miRNA:   3'- gGCUGG--AGGCuGCuGUu---CCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 3520 0.67 0.825108
Target:  5'- gCGGCCUgguaccaCGGCGGCAAGGcCGGGa- -3'
miRNA:   3'- gGCUGGAg------GCUGCUGUUCCuGUUCcg -5'
31784 5' -54 NC_006938.1 + 3686 0.67 0.775162
Target:  5'- -aGAUgCUCCGugaGCGACGGugcgcguucauccuGGACGAGGCc -3'
miRNA:   3'- ggCUG-GAGGC---UGCUGUU--------------CCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 4440 0.67 0.806827
Target:  5'- gCCGuGCgCUuuGACGgguccaucaGCGAGGACGagaGGGCc -3'
miRNA:   3'- -GGC-UG-GAggCUGC---------UGUUCCUGU---UCCG- -5'
31784 5' -54 NC_006938.1 + 5222 0.71 0.588373
Target:  5'- cCCG-UCUCCGAagaGACAGGGuccuGGGCc -3'
miRNA:   3'- -GGCuGGAGGCUg--CUGUUCCugu-UCCG- -5'
31784 5' -54 NC_006938.1 + 6807 0.75 0.372083
Target:  5'- gCCGACCUguccaCGGuCGACAAGGcCGAGGg -3'
miRNA:   3'- -GGCUGGAg----GCU-GCUGUUCCuGUUCCg -5'
31784 5' -54 NC_006938.1 + 6898 0.67 0.816061
Target:  5'- cUCGGCCUugucgaCCGugGACAGGucGGCcuuGGCc -3'
miRNA:   3'- -GGCUGGA------GGCugCUGUUC--CUGuu-CCG- -5'
31784 5' -54 NC_006938.1 + 6998 0.74 0.416617
Target:  5'- aCGGCC-CCGGCuggggaGGCAAGGcCGGGGCc -3'
miRNA:   3'- gGCUGGaGGCUG------CUGUUCCuGUUCCG- -5'
31784 5' -54 NC_006938.1 + 7485 0.67 0.816061
Target:  5'- aCGGCCcugagCCGGguCGACGAGuGGCu-GGCa -3'
miRNA:   3'- gGCUGGa----GGCU--GCUGUUC-CUGuuCCG- -5'
31784 5' -54 NC_006938.1 + 7537 0.74 0.425908
Target:  5'- uCCGGCuCUUCGGCuacGCGGGGAC-GGGCa -3'
miRNA:   3'- -GGCUG-GAGGCUGc--UGUUCCUGuUCCG- -5'
31784 5' -54 NC_006938.1 + 9871 0.66 0.859256
Target:  5'- -aGGCCUCCGuCGAgCuggcccAGGAgaAGGGCg -3'
miRNA:   3'- ggCUGGAGGCuGCU-Gu-----UCCUg-UUCCG- -5'
31784 5' -54 NC_006938.1 + 10388 0.75 0.372083
Target:  5'- uCCGAUga-CGACGACcagucgaacaucGAGGGCGAGGCg -3'
miRNA:   3'- -GGCUGgagGCUGCUG------------UUCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 10640 0.66 0.87037
Target:  5'- aUGACCUacguccccgCCGAguaugugacggaggaCGGCAAGGugGucgaGGGCg -3'
miRNA:   3'- gGCUGGA---------GGCU---------------GCUGUUCCugU----UCCG- -5'
31784 5' -54 NC_006938.1 + 10741 0.76 0.315395
Target:  5'- gCCGuCCUCCGucacauacuCGGCGGGGACGuAGGUc -3'
miRNA:   3'- -GGCuGGAGGCu--------GCUGUUCCUGU-UCCG- -5'
31784 5' -54 NC_006938.1 + 11269 0.7 0.653053
Target:  5'- -aGGCCU-CGGCGuCGAGGAgGAuGGCg -3'
miRNA:   3'- ggCUGGAgGCUGCuGUUCCUgUU-CCG- -5'
31784 5' -54 NC_006938.1 + 11493 0.68 0.737835
Target:  5'- gUGACUucuuUCCGAUucGCGAGGcgcGCAAGGCg -3'
miRNA:   3'- gGCUGG----AGGCUGc-UGUUCC---UGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.