miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31784 5' -54 NC_006938.1 + 47604 0.66 0.842607
Target:  5'- aCCGGCgUCaCGGCGACc-GGAUAcacgcucGGCa -3'
miRNA:   3'- -GGCUGgAG-GCUGCUGuuCCUGUu------CCG- -5'
31784 5' -54 NC_006938.1 + 26563 0.66 0.842607
Target:  5'- aCG-CCaCCGA-GGCGAaccuGGACAAGGCc -3'
miRNA:   3'- gGCuGGaGGCUgCUGUU----CCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 1709 0.66 0.842607
Target:  5'- cCCGuacAUCUgCGACGACGccauGGACAGcuccGGCc -3'
miRNA:   3'- -GGC---UGGAgGCUGCUGUu---CCUGUU----CCG- -5'
31784 5' -54 NC_006938.1 + 60249 0.66 0.842607
Target:  5'- aCCGG-CUCCGGCGACAAuGGuCGucuGCc -3'
miRNA:   3'- -GGCUgGAGGCUGCUGUU-CCuGUuc-CG- -5'
31784 5' -54 NC_006938.1 + 47491 0.66 0.842607
Target:  5'- aUCGGgUUCCGcGCGACGAGuGugA-GGCu -3'
miRNA:   3'- -GGCUgGAGGC-UGCUGUUC-CugUuCCG- -5'
31784 5' -54 NC_006938.1 + 37778 0.66 0.842607
Target:  5'- gCCGAucgcaUCUUCGAgGuccGCGAGGACGAcGGUg -3'
miRNA:   3'- -GGCU-----GGAGGCUgC---UGUUCCUGUU-CCG- -5'
31784 5' -54 NC_006938.1 + 21380 0.66 0.841752
Target:  5'- gCUGGCCgagCCGGuccgggUGACAAgccccucGGAgGAGGCg -3'
miRNA:   3'- -GGCUGGa--GGCU------GCUGUU-------CCUgUUCCG- -5'
31784 5' -54 NC_006938.1 + 24637 0.66 0.839173
Target:  5'- aCGACC-CCGgccACGGCAugaaguucaagauGGACcGGGCc -3'
miRNA:   3'- gGCUGGaGGC---UGCUGUu------------CCUGuUCCG- -5'
31784 5' -54 NC_006938.1 + 21694 0.66 0.83396
Target:  5'- cCCGGCuCUCUgagauaGACGACcuGGACcagcacgggGAGGUg -3'
miRNA:   3'- -GGCUG-GAGG------CUGCUGuuCCUG---------UUCCG- -5'
31784 5' -54 NC_006938.1 + 52557 0.66 0.83396
Target:  5'- aUGGCgUUCGACGA----GACAAGGCu -3'
miRNA:   3'- gGCUGgAGGCUGCUguucCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 11564 0.66 0.83396
Target:  5'- gUCGugUucgUCgGGCGGCAGGuGGCgGAGGCc -3'
miRNA:   3'- -GGCugG---AGgCUGCUGUUC-CUG-UUCCG- -5'
31784 5' -54 NC_006938.1 + 59247 0.67 0.825108
Target:  5'- gUGAaggucUCUCCGGCuGCcAGGACAGGcGCg -3'
miRNA:   3'- gGCU-----GGAGGCUGcUGuUCCUGUUC-CG- -5'
31784 5' -54 NC_006938.1 + 3520 0.67 0.825108
Target:  5'- gCGGCCUgguaccaCGGCGGCAAGGcCGGGa- -3'
miRNA:   3'- gGCUGGAg------GCUGCUGUUCCuGUUCcg -5'
31784 5' -54 NC_006938.1 + 56066 0.67 0.825108
Target:  5'- -aGAUCUCCGcCGugAuguucGGGACAcGGUu -3'
miRNA:   3'- ggCUGGAGGCuGCugU-----UCCUGUuCCG- -5'
31784 5' -54 NC_006938.1 + 20681 0.67 0.825108
Target:  5'- gCCG-CCgCCGugGugagaacCAGGGACA-GGCc -3'
miRNA:   3'- -GGCuGGaGGCugCu------GUUCCUGUuCCG- -5'
31784 5' -54 NC_006938.1 + 55531 0.67 0.825108
Target:  5'- gCGACCucUCCGucuCGGCGucGACGuauGGCa -3'
miRNA:   3'- gGCUGG--AGGCu--GCUGUucCUGUu--CCG- -5'
31784 5' -54 NC_006938.1 + 29412 0.67 0.825108
Target:  5'- aCUGAUCaaguUCaUGAcCGACGAGGACAuucgccaaGGGCg -3'
miRNA:   3'- -GGCUGG----AG-GCU-GCUGUUCCUGU--------UCCG- -5'
31784 5' -54 NC_006938.1 + 28664 0.67 0.825108
Target:  5'- -gGAgCUCCGucGCGGCuGGGAgUggGGCu -3'
miRNA:   3'- ggCUgGAGGC--UGCUGuUCCU-GuuCCG- -5'
31784 5' -54 NC_006938.1 + 7485 0.67 0.816061
Target:  5'- aCGGCCcugagCCGGguCGACGAGuGGCu-GGCa -3'
miRNA:   3'- gGCUGGa----GGCU--GCUGUUC-CUGuuCCG- -5'
31784 5' -54 NC_006938.1 + 18364 0.67 0.816061
Target:  5'- aCUGcuCCUUcaaccagauggCGGCgGACAAGGACAAcGGCa -3'
miRNA:   3'- -GGCu-GGAG-----------GCUG-CUGUUCCUGUU-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.