miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31785 3' -60 NC_006938.1 + 51928 0.66 0.434875
Target:  5'- cUGGGGUCAG--GCgGCGGUGgGCUc -3'
miRNA:   3'- uACCUCAGUCagCGgUGCCGCgCGAu -5'
31785 3' -60 NC_006938.1 + 24542 0.66 0.473522
Target:  5'- -cGuGAGaCAGgucCGCCGCcGCGCGCUGc -3'
miRNA:   3'- uaC-CUCaGUCa--GCGGUGcCGCGCGAU- -5'
31785 3' -60 NC_006938.1 + 23818 0.66 0.482455
Target:  5'- -cGG-GUCAGUUGUucgcggcaccacuCAgGGCGCGCUc -3'
miRNA:   3'- uaCCuCAGUCAGCG-------------GUgCCGCGCGAu -5'
31785 3' -60 NC_006938.1 + 24677 0.66 0.453976
Target:  5'- -cGGAGUgccCAGggaggagaaGCCGCGaGCGCGCa- -3'
miRNA:   3'- uaCCUCA---GUCag-------CGGUGC-CGCGCGau -5'
31785 3' -60 NC_006938.1 + 11603 0.66 0.453976
Target:  5'- uGUGGAuGUCGGcCGCCuu-GCGCGCc- -3'
miRNA:   3'- -UACCU-CAGUCaGCGGugcCGCGCGau -5'
31785 3' -60 NC_006938.1 + 11130 0.67 0.416248
Target:  5'- cAUGGAGaUCGGcuugucgCGCCaguuguACGGCGCGUa- -3'
miRNA:   3'- -UACCUC-AGUCa------GCGG------UGCCGCGCGau -5'
31785 3' -60 NC_006938.1 + 1826 0.68 0.346865
Target:  5'- cUGGGGcCAGUUGCCAcCGGCcggaGCUGu -3'
miRNA:   3'- uACCUCaGUCAGCGGU-GCCGcg--CGAU- -5'
31785 3' -60 NC_006938.1 + 46377 0.69 0.28616
Target:  5'- cGUGGGGUCcuGGaagagcucguUCGCCACcGCGCGCa- -3'
miRNA:   3'- -UACCUCAG--UC----------AGCGGUGcCGCGCGau -5'
31785 3' -60 NC_006938.1 + 1877 1.04 0.000724
Target:  5'- gAUGGAGUCAGUCGCCACGGCGCGCUAu -3'
miRNA:   3'- -UACCUCAGUCAGCGGUGCCGCGCGAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.