miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31785 5' -54.6 NC_006938.1 + 58902 0.66 0.764203
Target:  5'- aUCucUUACuCCACCGGUauCGUGACg -3'
miRNA:   3'- aAGuuGAUGuGGUGGCCGacGCACUG- -5'
31785 5' -54.6 NC_006938.1 + 39053 0.66 0.7433
Target:  5'- -aCGACgGCACCGCUGGUgucGC-UGGCa -3'
miRNA:   3'- aaGUUGaUGUGGUGGCCGa--CGcACUG- -5'
31785 5' -54.6 NC_006938.1 + 41848 0.66 0.7433
Target:  5'- --aGGCUGCugCgACgCGGUgauuUGCGUGGCg -3'
miRNA:   3'- aagUUGAUGugG-UG-GCCG----ACGCACUG- -5'
31785 5' -54.6 NC_006938.1 + 58031 0.67 0.71111
Target:  5'- --aAGCcGCGCCcucGCCGGCacagacugggGCGUGACg -3'
miRNA:   3'- aagUUGaUGUGG---UGGCCGa---------CGCACUG- -5'
31785 5' -54.6 NC_006938.1 + 12675 0.67 0.678204
Target:  5'- --gGACUGCGCCAgUCGGUUGCGa--- -3'
miRNA:   3'- aagUUGAUGUGGU-GGCCGACGCacug -5'
31785 5' -54.6 NC_006938.1 + 61761 0.67 0.654911
Target:  5'- gUUCGAUcACGCCACCGaGCUcagcgcugccaacGCGgugGACa -3'
miRNA:   3'- -AAGUUGaUGUGGUGGC-CGA-------------CGCa--CUG- -5'
31785 5' -54.6 NC_006938.1 + 32822 0.68 0.644894
Target:  5'- -aCAACccCGCCaaGCUGGCcGCGUGGCu -3'
miRNA:   3'- aaGUUGauGUGG--UGGCCGaCGCACUG- -5'
31785 5' -54.6 NC_006938.1 + 25334 0.69 0.578217
Target:  5'- gUCGACUGguCCgaGCCGGgUcugcGCGUGACg -3'
miRNA:   3'- aAGUUGAUguGG--UGGCCgA----CGCACUG- -5'
31785 5' -54.6 NC_006938.1 + 13175 0.7 0.502575
Target:  5'- gUUCGcACccgGCACCACCGGgaGUGgGACa -3'
miRNA:   3'- -AAGU-UGa--UGUGGUGGCCgaCGCaCUG- -5'
31785 5' -54.6 NC_006938.1 + 51794 0.71 0.451276
Target:  5'- aUCGAg-GCgACCaACCGGCUGCGcGACa -3'
miRNA:   3'- aAGUUgaUG-UGG-UGGCCGACGCaCUG- -5'
31785 5' -54.6 NC_006938.1 + 31551 0.71 0.421908
Target:  5'- -cCAGC--CACCACUGGCUcCGUGGCa -3'
miRNA:   3'- aaGUUGauGUGGUGGCCGAcGCACUG- -5'
31785 5' -54.6 NC_006938.1 + 26032 0.73 0.338648
Target:  5'- -aCAgcACUGCccagGCCaggguggaucccguACCGGCUGCGUGGCa -3'
miRNA:   3'- aaGU--UGAUG----UGG--------------UGGCCGACGCACUG- -5'
31785 5' -54.6 NC_006938.1 + 1916 1.06 0.001733
Target:  5'- gUUCAACUACACCACCGGCUGCGUGACc -3'
miRNA:   3'- -AAGUUGAUGUGGUGGCCGACGCACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.