miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31786 5' -50.4 NC_006938.1 + 19195 0.66 0.966272
Target:  5'- aGuGGACGUGGAGGUgggUGUCucaUGGGg -3'
miRNA:   3'- gCuUCUGCACUUCUA---GCGGuugACCC- -5'
31786 5' -50.4 NC_006938.1 + 8385 0.66 0.958841
Target:  5'- aGGcAGACGaGccGGUCGCCGACcaccGGGa -3'
miRNA:   3'- gCU-UCUGCaCuuCUAGCGGUUGa---CCC- -5'
31786 5' -50.4 NC_006938.1 + 55537 0.66 0.958442
Target:  5'- cCGAcGACGgacccgaUGAGGAa-GCCGAuCUGGGg -3'
miRNA:   3'- -GCUuCUGC-------ACUUCUagCGGUU-GACCC- -5'
31786 5' -50.4 NC_006938.1 + 51973 0.66 0.954733
Target:  5'- gCGAAgGACGUGGAGGaccUCGCagaGACcgUGGa -3'
miRNA:   3'- -GCUU-CUGCACUUCU---AGCGg--UUG--ACCc -5'
31786 5' -50.4 NC_006938.1 + 17159 0.66 0.952139
Target:  5'- gGAcaGGACcUGGAGAUCGCCAugacggugauggucgGCauggUGGGc -3'
miRNA:   3'- gCU--UCUGcACUUCUAGCGGU---------------UG----ACCC- -5'
31786 5' -50.4 NC_006938.1 + 4277 0.67 0.945706
Target:  5'- gGAGGACGUGAacGGAgaGCCGG-UGGa -3'
miRNA:   3'- gCUUCUGCACU--UCUagCGGUUgACCc -5'
31786 5' -50.4 NC_006938.1 + 23004 0.67 0.945706
Target:  5'- gGAGGACGgcu-GGUCGCgGgaGCUGGa -3'
miRNA:   3'- gCUUCUGCacuuCUAGCGgU--UGACCc -5'
31786 5' -50.4 NC_006938.1 + 25561 0.67 0.945706
Target:  5'- gGAGGGCGUGAAcGugucUCGCC---UGGGc -3'
miRNA:   3'- gCUUCUGCACUU-Cu---AGCGGuugACCC- -5'
31786 5' -50.4 NC_006938.1 + 19572 0.67 0.935571
Target:  5'- gGGAGAUgGUGGAGAUCaCCGGCuucUGGa -3'
miRNA:   3'- gCUUCUG-CACUUCUAGcGGUUG---ACCc -5'
31786 5' -50.4 NC_006938.1 + 42754 0.67 0.929517
Target:  5'- gGAGGugGUGGAGc-CGCCAuagGCUguucccaGGGa -3'
miRNA:   3'- gCUUCugCACUUCuaGCGGU---UGA-------CCC- -5'
31786 5' -50.4 NC_006938.1 + 25553 0.67 0.924309
Target:  5'- uGAAGcUGUGcu--UCGCCAGCUGGu -3'
miRNA:   3'- gCUUCuGCACuucuAGCGGUUGACCc -5'
31786 5' -50.4 NC_006938.1 + 32934 0.68 0.911916
Target:  5'- cCGAGGuCGUGGAagcucGAcCGCUcguucGACUGGGg -3'
miRNA:   3'- -GCUUCuGCACUU-----CUaGCGG-----UUGACCC- -5'
31786 5' -50.4 NC_006938.1 + 24507 0.68 0.911916
Target:  5'- aCGuGAGACGguaGAGGAugUCGCCGACccUGGu -3'
miRNA:   3'- -GC-UUCUGCa--CUUCU--AGCGGUUG--ACCc -5'
31786 5' -50.4 NC_006938.1 + 49318 0.68 0.911916
Target:  5'- uCGAgcaGGACGUGGAGcuguucAUCGacaaugucauccUCGGCUGGGg -3'
miRNA:   3'- -GCU---UCUGCACUUC------UAGC------------GGUUGACCC- -5'
31786 5' -50.4 NC_006938.1 + 61186 0.69 0.883795
Target:  5'- gGAAGAgCGUGggGAcagccUCGUCGAUcugcguggcgUGGGu -3'
miRNA:   3'- gCUUCU-GCACuuCU-----AGCGGUUG----------ACCC- -5'
31786 5' -50.4 NC_006938.1 + 53219 0.69 0.876093
Target:  5'- uGggGAUGUucGGcgCGCCAACUGc- -3'
miRNA:   3'- gCuuCUGCAcuUCuaGCGGUUGACcc -5'
31786 5' -50.4 NC_006938.1 + 7591 0.69 0.876093
Target:  5'- cCGAGGGCGUcucgggccgaguGAAGuUCGCCGcguacACUGGc -3'
miRNA:   3'- -GCUUCUGCA------------CUUCuAGCGGU-----UGACCc -5'
31786 5' -50.4 NC_006938.1 + 16111 0.69 0.876093
Target:  5'- -cAAGGCGcUGAGGGagGgCGGCUGGGu -3'
miRNA:   3'- gcUUCUGC-ACUUCUagCgGUUGACCC- -5'
31786 5' -50.4 NC_006938.1 + 24336 0.84 0.183712
Target:  5'- gGAGGACGUGGAGAUCGuCCAGuccCUGGa -3'
miRNA:   3'- gCUUCUGCACUUCUAGC-GGUU---GACCc -5'
31786 5' -50.4 NC_006938.1 + 2181 1.13 0.002368
Target:  5'- aCGAAGACGUGAAGAUCGCCAACUGGGg -3'
miRNA:   3'- -GCUUCUGCACUUCUAGCGGUUGACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.