miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31787 3' -54.8 NC_006938.1 + 2522 1.12 0.000808
Target:  5'- aUCCGAGCGUACAAGAUGGGAGCUCCCu -3'
miRNA:   3'- -AGGCUCGCAUGUUCUACCCUCGAGGG- -5'
31787 3' -54.8 NC_006938.1 + 18081 0.66 0.80544
Target:  5'- aUCCGAGCG-ACGaaGGAgcgucGGGAcGCgUCCg -3'
miRNA:   3'- -AGGCUCGCaUGU--UCUa----CCCU-CG-AGGg -5'
31787 3' -54.8 NC_006938.1 + 27007 0.66 0.80544
Target:  5'- -aCGAGCuGgcacgGCGAGGagUGGGAGCgCCg -3'
miRNA:   3'- agGCUCG-Ca----UGUUCU--ACCCUCGaGGg -5'
31787 3' -54.8 NC_006938.1 + 34559 0.66 0.786227
Target:  5'- -aCGAGCaGgcCAGGGUcGGAGCgaaugCCCg -3'
miRNA:   3'- agGCUCG-CauGUUCUAcCCUCGa----GGG- -5'
31787 3' -54.8 NC_006938.1 + 57407 0.66 0.756256
Target:  5'- uUCCGgagcAGCGcaccCAGGAgGuGGAGCUUCCa -3'
miRNA:   3'- -AGGC----UCGCau--GUUCUaC-CCUCGAGGG- -5'
31787 3' -54.8 NC_006938.1 + 50264 0.68 0.693259
Target:  5'- gUCCG-GCGcaGCAAGAUauugaGGGAGaaCCCg -3'
miRNA:   3'- -AGGCuCGCa-UGUUCUA-----CCCUCgaGGG- -5'
31787 3' -54.8 NC_006938.1 + 4841 0.74 0.326248
Target:  5'- gCCGAGgaGUucgGCGAGGUGGucGAGCUCCUg -3'
miRNA:   3'- aGGCUCg-CA---UGUUCUACC--CUCGAGGG- -5'
31787 3' -54.8 NC_006938.1 + 28592 0.67 0.714606
Target:  5'- gCCGAGCG-GCGcuugccacGGA--GGAGCUCCUc -3'
miRNA:   3'- aGGCUCGCaUGU--------UCUacCCUCGAGGG- -5'
31787 3' -54.8 NC_006938.1 + 10089 0.68 0.67168
Target:  5'- --gGAGCGauggACGugAGGUGGGAGUugcguaUCCCg -3'
miRNA:   3'- aggCUCGCa---UGU--UCUACCCUCG------AGGG- -5'
31787 3' -54.8 NC_006938.1 + 2647 0.7 0.549278
Target:  5'- cCCG-GCGUgcuGCAGGGaccacuuguggaagUcccaGGGAGCUCCCa -3'
miRNA:   3'- aGGCuCGCA---UGUUCU--------------A----CCCUCGAGGG- -5'
31787 3' -54.8 NC_006938.1 + 50165 0.72 0.450017
Target:  5'- cCUGAGCGUugGCGGGAccUGuGGAGCcaCCCg -3'
miRNA:   3'- aGGCUCGCA--UGUUCU--AC-CCUCGa-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.