miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31787 5' -59 NC_006938.1 + 2091 0.73 0.229066
Target:  5'- aGCAGGUGGUCUUUGUGGa--GCCGGa -3'
miRNA:   3'- -UGUUCACCAGGGACGUCgugCGGCCc -5'
31787 5' -59 NC_006938.1 + 2558 1.1 0.000421
Target:  5'- cACAAGUGGUCCCUGCAGCACGCCGGGg -3'
miRNA:   3'- -UGUUCACCAGGGACGUCGUGCGGCCC- -5'
31787 5' -59 NC_006938.1 + 10878 0.7 0.323037
Target:  5'- -gAAGUGGUCCgUgGCcuggucagcaAGCGCGCCGuGGu -3'
miRNA:   3'- ugUUCACCAGGgA-CG----------UCGUGCGGC-CC- -5'
31787 5' -59 NC_006938.1 + 21022 0.68 0.452426
Target:  5'- uCAAGUGGUUCCgcccagGCGGCcCGUgGGu -3'
miRNA:   3'- uGUUCACCAGGGa-----CGUCGuGCGgCCc -5'
31787 5' -59 NC_006938.1 + 23573 0.69 0.379833
Target:  5'- gACAAGcUGGUCCUcGCGGCugGCUu-- -3'
miRNA:   3'- -UGUUC-ACCAGGGaCGUCGugCGGccc -5'
31787 5' -59 NC_006938.1 + 35857 0.76 0.128567
Target:  5'- gACGGGUGGUCacgaucgaCUGCAGCAgGUCGGcGg -3'
miRNA:   3'- -UGUUCACCAGg-------GACGUCGUgCGGCC-C- -5'
31787 5' -59 NC_006938.1 + 39210 0.67 0.491446
Target:  5'- -gGAGUGGUCUCUGCacccugucGGuCACGCCu-- -3'
miRNA:   3'- ugUUCACCAGGGACG--------UC-GUGCGGccc -5'
31787 5' -59 NC_006938.1 + 43256 0.67 0.501446
Target:  5'- aGCAcGGUGG-CCCUGCAG-ACGaCUGGc -3'
miRNA:   3'- -UGU-UCACCaGGGACGUCgUGC-GGCCc -5'
31787 5' -59 NC_006938.1 + 46792 0.69 0.388474
Target:  5'- uCGAGaUGGUCgagauCCUGCAGCcCGCCGa- -3'
miRNA:   3'- uGUUC-ACCAG-----GGACGUCGuGCGGCcc -5'
31787 5' -59 NC_006938.1 + 51903 0.67 0.471732
Target:  5'- cGCcAGUGG-CgCUGCAGCagACGCUcuGGGg -3'
miRNA:   3'- -UGuUCACCaGgGACGUCG--UGCGG--CCC- -5'
31787 5' -59 NC_006938.1 + 57969 0.66 0.563103
Target:  5'- gACGGGUGGgacggcggcUCCCUGCuccAGU-CGCUGGa -3'
miRNA:   3'- -UGUUCACC---------AGGGACG---UCGuGCGGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.