miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31788 3' -49.2 NC_006938.1 + 18605 0.66 0.969901
Target:  5'- ----cGGCGCGUCCg-AGGCgGCGCAg -3'
miRNA:   3'- caacuUUGCGUAGGagUUCGgUGUGU- -5'
31788 3' -49.2 NC_006938.1 + 62650 0.66 0.962761
Target:  5'- -aUGAGACGgAacUCCUCGGccGCCgACGCGu -3'
miRNA:   3'- caACUUUGCgU--AGGAGUU--CGG-UGUGU- -5'
31788 3' -49.2 NC_006938.1 + 34316 0.66 0.962761
Target:  5'- -aUGAGcACGCGguacUUCUCcuGCCACACc -3'
miRNA:   3'- caACUU-UGCGU----AGGAGuuCGGUGUGu -5'
31788 3' -49.2 NC_006938.1 + 53914 0.66 0.958781
Target:  5'- -cUGGAGCGCggCCUCGGuGCC-CAgGg -3'
miRNA:   3'- caACUUUGCGuaGGAGUU-CGGuGUgU- -5'
31788 3' -49.2 NC_006938.1 + 27907 0.67 0.949968
Target:  5'- cUUGgcACG-AUCCUCuuccGCCACGCGu -3'
miRNA:   3'- cAACuuUGCgUAGGAGuu--CGGUGUGU- -5'
31788 3' -49.2 NC_006938.1 + 35746 0.67 0.949968
Target:  5'- --cGAcgGACaGCAucUCCUCGcGCCACACc -3'
miRNA:   3'- caaCU--UUG-CGU--AGGAGUuCGGUGUGu -5'
31788 3' -49.2 NC_006938.1 + 58616 0.67 0.945124
Target:  5'- --cGAGACGaCAgaggCCUaCGAGCUugACAu -3'
miRNA:   3'- caaCUUUGC-GUa---GGA-GUUCGGugUGU- -5'
31788 3' -49.2 NC_006938.1 + 39909 0.67 0.939451
Target:  5'- --gGAGACGCucgCUUCGgcucguggggcggGGCCACGCu -3'
miRNA:   3'- caaCUUUGCGua-GGAGU-------------UCGGUGUGu -5'
31788 3' -49.2 NC_006938.1 + 20942 0.68 0.922746
Target:  5'- --gGAGACGCcgaggUCUCGGGCCACcucGCGc -3'
miRNA:   3'- caaCUUUGCGua---GGAGUUCGGUG---UGU- -5'
31788 3' -49.2 NC_006938.1 + 46741 0.68 0.922746
Target:  5'- aGUUGGaaaauuucGACGagAUCCUCGAGUCAgACGg -3'
miRNA:   3'- -CAACU--------UUGCg-UAGGAGUUCGGUgUGU- -5'
31788 3' -49.2 NC_006938.1 + 41119 0.68 0.916394
Target:  5'- --cGAGACGCGaacagcgacgCCUgGAGCUGCGCGu -3'
miRNA:   3'- caaCUUUGCGUa---------GGAgUUCGGUGUGU- -5'
31788 3' -49.2 NC_006938.1 + 18227 0.68 0.916394
Target:  5'- ----cAugGCGUCCUCGGgucccaccGCCACACc -3'
miRNA:   3'- caacuUugCGUAGGAGUU--------CGGUGUGu -5'
31788 3' -49.2 NC_006938.1 + 9006 0.68 0.895537
Target:  5'- -aUGGAGCGCG-CCaagCAGGCCGC-CGc -3'
miRNA:   3'- caACUUUGCGUaGGa--GUUCGGUGuGU- -5'
31788 3' -49.2 NC_006938.1 + 4299 0.68 0.895537
Target:  5'- -gUGGAGCGCGUCCacaccuUCAAGgagaacCCGCGCc -3'
miRNA:   3'- caACUUUGCGUAGG------AGUUC------GGUGUGu -5'
31788 3' -49.2 NC_006938.1 + 42365 0.69 0.887996
Target:  5'- --cGAucGACgGCAUCUcgccugUCAAGCCGCACu -3'
miRNA:   3'- caaCU--UUG-CGUAGG------AGUUCGGUGUGu -5'
31788 3' -49.2 NC_006938.1 + 32929 0.69 0.887996
Target:  5'- -aUGucccaGCugcCCUCGAGCCACGCGg -3'
miRNA:   3'- caACuuug-CGua-GGAGUUCGGUGUGU- -5'
31788 3' -49.2 NC_006938.1 + 32992 0.69 0.887996
Target:  5'- -aUGAAGCGCuggaccacguugAUCUUCGGGucCCACACGu -3'
miRNA:   3'- caACUUUGCG------------UAGGAGUUC--GGUGUGU- -5'
31788 3' -49.2 NC_006938.1 + 30747 0.69 0.86368
Target:  5'- --gGGAGgGCGUCCUgCAGGCuCAgGCAg -3'
miRNA:   3'- caaCUUUgCGUAGGA-GUUCG-GUgUGU- -5'
31788 3' -49.2 NC_006938.1 + 25402 0.7 0.817991
Target:  5'- -cUGGGACGUGUCCUacuGCCACGg- -3'
miRNA:   3'- caACUUUGCGUAGGAguuCGGUGUgu -5'
31788 3' -49.2 NC_006938.1 + 21292 0.7 0.817991
Target:  5'- --gGAAGCGgAUCCUCAAGaaGCugAa -3'
miRNA:   3'- caaCUUUGCgUAGGAGUUCggUGugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.