miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31789 5' -55 NC_006938.1 + 48654 0.65 0.805362
Target:  5'- -uGGAGGCGAc-CAAGgCCgUCCGGAa -3'
miRNA:   3'- gcUCUUCGCUcaGUUCaGGgAGGCCU- -5'
31789 5' -55 NC_006938.1 + 36955 0.65 0.805362
Target:  5'- gCGAG-AGCGAGgaUCAGGgCUgUUCGGAg -3'
miRNA:   3'- -GCUCuUCGCUC--AGUUCaGGgAGGCCU- -5'
31789 5' -55 NC_006938.1 + 48950 0.66 0.795878
Target:  5'- uCGAGGcaauccgcgAGCGGGUgAAGaCCCgCUGGAu -3'
miRNA:   3'- -GCUCU---------UCGCUCAgUUCaGGGaGGCCU- -5'
31789 5' -55 NC_006938.1 + 15205 0.66 0.795878
Target:  5'- cCGGGucucGCGAGUCAg--CCCUgacucCCGGAg -3'
miRNA:   3'- -GCUCuu--CGCUCAGUucaGGGA-----GGCCU- -5'
31789 5' -55 NC_006938.1 + 52879 0.66 0.776423
Target:  5'- aGAGAGGaCGuAGUCcguccAGUCCUUgaaCCGGAa -3'
miRNA:   3'- gCUCUUC-GC-UCAGu----UCAGGGA---GGCCU- -5'
31789 5' -55 NC_006938.1 + 13218 0.66 0.766473
Target:  5'- cCGAGAcgGGCGGG-CugacAGUCCUggcucCCGGAa -3'
miRNA:   3'- -GCUCU--UCGCUCaGu---UCAGGGa----GGCCU- -5'
31789 5' -55 NC_006938.1 + 23520 0.67 0.725436
Target:  5'- uGAcGGGCcaGGUCGAGgagCUCUCCGGAg -3'
miRNA:   3'- gCUcUUCGc-UCAGUUCa--GGGAGGCCU- -5'
31789 5' -55 NC_006938.1 + 36231 0.68 0.672188
Target:  5'- -aAGAGGCGGGaUC-GGUCCCUCCc-- -3'
miRNA:   3'- gcUCUUCGCUC-AGuUCAGGGAGGccu -5'
31789 5' -55 NC_006938.1 + 55317 0.68 0.66463
Target:  5'- uGGGAGGcCGAGUCAgucgucggucgcccGGUCCacgcguuccgcuaUCCGGGa -3'
miRNA:   3'- gCUCUUC-GCUCAGU--------------UCAGGg------------AGGCCU- -5'
31789 5' -55 NC_006938.1 + 34040 0.68 0.639713
Target:  5'- gCGAccAGCGGGUCcAGg-CCUCCGGGc -3'
miRNA:   3'- -GCUcuUCGCUCAGuUCagGGAGGCCU- -5'
31789 5' -55 NC_006938.1 + 37123 0.69 0.607176
Target:  5'- -cAGggGcCGGGUCAuGUCCCgcgcgCCGGu -3'
miRNA:   3'- gcUCuuC-GCUCAGUuCAGGGa----GGCCu -5'
31789 5' -55 NC_006938.1 + 24352 0.69 0.581269
Target:  5'- uGAGcAGCGGGUCgAAGUCCauguggcggucggUCCGGGu -3'
miRNA:   3'- gCUCuUCGCUCAG-UUCAGGg------------AGGCCU- -5'
31789 5' -55 NC_006938.1 + 55117 0.72 0.461118
Target:  5'- gCGAGAccAGCGcAGUCGA-UCCCcuUCCGGGu -3'
miRNA:   3'- -GCUCU--UCGC-UCAGUUcAGGG--AGGCCU- -5'
31789 5' -55 NC_006938.1 + 15146 0.73 0.377554
Target:  5'- gGAGggGCG-GUC--GUCgCUCCGGAg -3'
miRNA:   3'- gCUCuuCGCuCAGuuCAGgGAGGCCU- -5'
31789 5' -55 NC_006938.1 + 4699 1.1 0.001224
Target:  5'- aCGAGAAGCGAGUCAAGUCCCUCCGGAa -3'
miRNA:   3'- -GCUCUUCGCUCAGUUCAGGGAGGCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.