Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31789 | 5' | -55 | NC_006938.1 | + | 48654 | 0.65 | 0.805362 |
Target: 5'- -uGGAGGCGAc-CAAGgCCgUCCGGAa -3' miRNA: 3'- gcUCUUCGCUcaGUUCaGGgAGGCCU- -5' |
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31789 | 5' | -55 | NC_006938.1 | + | 36955 | 0.65 | 0.805362 |
Target: 5'- gCGAG-AGCGAGgaUCAGGgCUgUUCGGAg -3' miRNA: 3'- -GCUCuUCGCUC--AGUUCaGGgAGGCCU- -5' |
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31789 | 5' | -55 | NC_006938.1 | + | 48950 | 0.66 | 0.795878 |
Target: 5'- uCGAGGcaauccgcgAGCGGGUgAAGaCCCgCUGGAu -3' miRNA: 3'- -GCUCU---------UCGCUCAgUUCaGGGaGGCCU- -5' |
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31789 | 5' | -55 | NC_006938.1 | + | 15205 | 0.66 | 0.795878 |
Target: 5'- cCGGGucucGCGAGUCAg--CCCUgacucCCGGAg -3' miRNA: 3'- -GCUCuu--CGCUCAGUucaGGGA-----GGCCU- -5' |
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31789 | 5' | -55 | NC_006938.1 | + | 52879 | 0.66 | 0.776423 |
Target: 5'- aGAGAGGaCGuAGUCcguccAGUCCUUgaaCCGGAa -3' miRNA: 3'- gCUCUUC-GC-UCAGu----UCAGGGA---GGCCU- -5' |
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31789 | 5' | -55 | NC_006938.1 | + | 13218 | 0.66 | 0.766473 |
Target: 5'- cCGAGAcgGGCGGG-CugacAGUCCUggcucCCGGAa -3' miRNA: 3'- -GCUCU--UCGCUCaGu---UCAGGGa----GGCCU- -5' |
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31789 | 5' | -55 | NC_006938.1 | + | 23520 | 0.67 | 0.725436 |
Target: 5'- uGAcGGGCcaGGUCGAGgagCUCUCCGGAg -3' miRNA: 3'- gCUcUUCGc-UCAGUUCa--GGGAGGCCU- -5' |
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31789 | 5' | -55 | NC_006938.1 | + | 36231 | 0.68 | 0.672188 |
Target: 5'- -aAGAGGCGGGaUC-GGUCCCUCCc-- -3' miRNA: 3'- gcUCUUCGCUC-AGuUCAGGGAGGccu -5' |
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31789 | 5' | -55 | NC_006938.1 | + | 55317 | 0.68 | 0.66463 |
Target: 5'- uGGGAGGcCGAGUCAgucgucggucgcccGGUCCacgcguuccgcuaUCCGGGa -3' miRNA: 3'- gCUCUUC-GCUCAGU--------------UCAGGg------------AGGCCU- -5' |
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31789 | 5' | -55 | NC_006938.1 | + | 34040 | 0.68 | 0.639713 |
Target: 5'- gCGAccAGCGGGUCcAGg-CCUCCGGGc -3' miRNA: 3'- -GCUcuUCGCUCAGuUCagGGAGGCCU- -5' |
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31789 | 5' | -55 | NC_006938.1 | + | 37123 | 0.69 | 0.607176 |
Target: 5'- -cAGggGcCGGGUCAuGUCCCgcgcgCCGGu -3' miRNA: 3'- gcUCuuC-GCUCAGUuCAGGGa----GGCCu -5' |
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31789 | 5' | -55 | NC_006938.1 | + | 24352 | 0.69 | 0.581269 |
Target: 5'- uGAGcAGCGGGUCgAAGUCCauguggcggucggUCCGGGu -3' miRNA: 3'- gCUCuUCGCUCAG-UUCAGGg------------AGGCCU- -5' |
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31789 | 5' | -55 | NC_006938.1 | + | 55117 | 0.72 | 0.461118 |
Target: 5'- gCGAGAccAGCGcAGUCGA-UCCCcuUCCGGGu -3' miRNA: 3'- -GCUCU--UCGC-UCAGUUcAGGG--AGGCCU- -5' |
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31789 | 5' | -55 | NC_006938.1 | + | 15146 | 0.73 | 0.377554 |
Target: 5'- gGAGggGCG-GUC--GUCgCUCCGGAg -3' miRNA: 3'- gCUCuuCGCuCAGuuCAGgGAGGCCU- -5' |
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31789 | 5' | -55 | NC_006938.1 | + | 4699 | 1.1 | 0.001224 |
Target: 5'- aCGAGAAGCGAGUCAAGUCCCUCCGGAa -3' miRNA: 3'- -GCUCUUCGCUCAGUUCAGGGAGGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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