Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31790 | 3' | -62.3 | NC_006938.1 | + | 5491 | 1.07 | 0.000387 |
Target: 5'- uACGCCGAGGACCACCAGGACGCGCCAc -3' miRNA: 3'- -UGCGGCUCCUGGUGGUCCUGCGCGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 11148 | 0.77 | 0.076026 |
Target: 5'- cGCGCCGAGGuacuCCAUCAuGGAgaucggcuuguCGCGCCAg -3' miRNA: 3'- -UGCGGCUCCu---GGUGGU-CCU-----------GCGCGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 18260 | 0.76 | 0.089447 |
Target: 5'- cGCGCgGAGGGcguCCACCAGGAUGC-CCu -3' miRNA: 3'- -UGCGgCUCCU---GGUGGUCCUGCGcGGu -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 20939 | 0.7 | 0.206846 |
Target: 5'- gACGCCGAGGucucggGCCACCu---CGCGCUg -3' miRNA: 3'- -UGCGGCUCC------UGGUGGuccuGCGCGGu -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 48456 | 0.7 | 0.212104 |
Target: 5'- gUGCCGAcGGucuCCGaCAGGACGCGCUc -3' miRNA: 3'- uGCGGCU-CCu--GGUgGUCCUGCGCGGu -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 10198 | 0.7 | 0.212104 |
Target: 5'- -gGCCGAGGAgCACguGGACGUucucacagucGCCc -3' miRNA: 3'- ugCGGCUCCUgGUGguCCUGCG----------CGGu -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 6132 | 0.69 | 0.252191 |
Target: 5'- uAUGCCGGagccacGGGCUACgAGGACGCGgaCCGc -3' miRNA: 3'- -UGCGGCU------CCUGGUGgUCCUGCGC--GGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 51082 | 0.69 | 0.258402 |
Target: 5'- cGCGCCGAcuGCCugCAGGACGUuguuCCGc -3' miRNA: 3'- -UGCGGCUccUGGugGUCCUGCGc---GGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 60418 | 0.69 | 0.258402 |
Target: 5'- gGCGCUGAGGGCCGCCGcgcuGACaGUuCCAa -3' miRNA: 3'- -UGCGGCUCCUGGUGGUc---CUG-CGcGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 7720 | 0.69 | 0.271199 |
Target: 5'- uCGCUGAGGACCugggccgccuuGCCAGuGuACGCGgCGa -3' miRNA: 3'- uGCGGCUCCUGG-----------UGGUC-C-UGCGCgGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 63408 | 0.68 | 0.2845 |
Target: 5'- gACGgCGAGGuCCGCUGGGACuG-GCCGc -3' miRNA: 3'- -UGCgGCUCCuGGUGGUCCUG-CgCGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 41482 | 0.68 | 0.298311 |
Target: 5'- uCGUCGGGGACUuugcCCAGGccgccGCGCaGCCGc -3' miRNA: 3'- uGCGGCUCCUGGu---GGUCC-----UGCG-CGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 50923 | 0.68 | 0.305409 |
Target: 5'- -gGCCGAGGGCCuggACCGaGACuuCGCCAc -3' miRNA: 3'- ugCGGCUCCUGG---UGGUcCUGc-GCGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 41159 | 0.68 | 0.305409 |
Target: 5'- gAUGUCGAGGACCcgGCCAcGGAggaggcgagUGCGCUc -3' miRNA: 3'- -UGCGGCUCCUGG--UGGU-CCU---------GCGCGGu -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 26661 | 0.68 | 0.305409 |
Target: 5'- aACGgCGAGGGCCGCU-GGAC-CGCg- -3' miRNA: 3'- -UGCgGCUCCUGGUGGuCCUGcGCGgu -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 58794 | 0.68 | 0.312637 |
Target: 5'- -gGCCGAGGAuUCACCAau-CGCGUCAc -3' miRNA: 3'- ugCGGCUCCU-GGUGGUccuGCGCGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 35138 | 0.67 | 0.327477 |
Target: 5'- cAUGCCGAGGuCCA--GGGAgGCGUCc -3' miRNA: 3'- -UGCGGCUCCuGGUggUCCUgCGCGGu -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 22822 | 0.67 | 0.327477 |
Target: 5'- aGCGCCGggagucGGGACCgGCCGGGACcacccaauCGCUg -3' miRNA: 3'- -UGCGGC------UCCUGG-UGGUCCUGc-------GCGGu -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 47791 | 0.67 | 0.342834 |
Target: 5'- cGCGCUGAGGACCuuCAGucCGUuguugGCCGc -3' miRNA: 3'- -UGCGGCUCCUGGugGUCcuGCG-----CGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 9204 | 0.67 | 0.349912 |
Target: 5'- gGCGuccuCCGAguGGACCACCcggacaucgAGGAguucauuCGCGCCAa -3' miRNA: 3'- -UGC----GGCU--CCUGGUGG---------UCCU-------GCGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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