miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31790 3' -62.3 NC_006938.1 + 5491 1.07 0.000387
Target:  5'- uACGCCGAGGACCACCAGGACGCGCCAc -3'
miRNA:   3'- -UGCGGCUCCUGGUGGUCCUGCGCGGU- -5'
31790 3' -62.3 NC_006938.1 + 35977 0.66 0.375078
Target:  5'- aACGCCGAGG-CCAUCAcu-CGCaccGCCAu -3'
miRNA:   3'- -UGCGGCUCCuGGUGGUccuGCG---CGGU- -5'
31790 3' -62.3 NC_006938.1 + 18250 0.66 0.383453
Target:  5'- -gGCaCGAGGGCCACUgcgaGGuGAC-CGCCGc -3'
miRNA:   3'- ugCG-GCUCCUGGUGG----UC-CUGcGCGGU- -5'
31790 3' -62.3 NC_006938.1 + 12847 0.66 0.38939
Target:  5'- aACGCCGAcgacaucgaccuguGGGCCaauccuggACCAGG-CGCucGCCGg -3'
miRNA:   3'- -UGCGGCU--------------CCUGG--------UGGUCCuGCG--CGGU- -5'
31790 3' -62.3 NC_006938.1 + 15737 0.66 0.400572
Target:  5'- cCGCUGAuGuCCGcguCCGGGGuCGCGCCAg -3'
miRNA:   3'- uGCGGCUcCuGGU---GGUCCU-GCGCGGU- -5'
31790 3' -62.3 NC_006938.1 + 35649 0.66 0.400572
Target:  5'- cCGCCGAGGugUggcGCgAGGAgaugcugucCGuCGCCAg -3'
miRNA:   3'- uGCGGCUCCugG---UGgUCCU---------GC-GCGGU- -5'
31790 3' -62.3 NC_006938.1 + 18086 0.66 0.400572
Target:  5'- aGCGaCGaAGGAgCGUCGGGACGCGuCCGa -3'
miRNA:   3'- -UGCgGC-UCCUgGUGGUCCUGCGC-GGU- -5'
31790 3' -62.3 NC_006938.1 + 51979 0.66 0.409312
Target:  5'- gACGUgGAGGACCucgcagagACCGuGGACGaGUCAu -3'
miRNA:   3'- -UGCGgCUCCUGG--------UGGU-CCUGCgCGGU- -5'
31790 3' -62.3 NC_006938.1 + 29306 0.66 0.412842
Target:  5'- gACGCCaccGGGACggagacgacaucaugCGCCGGGugGUGCgCGa -3'
miRNA:   3'- -UGCGGc--UCCUG---------------GUGGUCCugCGCG-GU- -5'
31790 3' -62.3 NC_006938.1 + 31700 0.67 0.358703
Target:  5'- cGCGCaGAccGGCCGCaAGGGCGCGUCAg -3'
miRNA:   3'- -UGCGgCUc-CUGGUGgUCCUGCGCGGU- -5'
31790 3' -62.3 NC_006938.1 + 18821 0.67 0.358703
Target:  5'- -gGUCGcGGGCgACgAGGGCGCGCg- -3'
miRNA:   3'- ugCGGCuCCUGgUGgUCCUGCGCGgu -5'
31790 3' -62.3 NC_006938.1 + 10198 0.7 0.212104
Target:  5'- -gGCCGAGGAgCACguGGACGUucucacagucGCCc -3'
miRNA:   3'- ugCGGCUCCUgGUGguCCUGCG----------CGGu -5'
31790 3' -62.3 NC_006938.1 + 6132 0.69 0.252191
Target:  5'- uAUGCCGGagccacGGGCUACgAGGACGCGgaCCGc -3'
miRNA:   3'- -UGCGGCU------CCUGGUGgUCCUGCGC--GGU- -5'
31790 3' -62.3 NC_006938.1 + 63408 0.68 0.2845
Target:  5'- gACGgCGAGGuCCGCUGGGACuG-GCCGc -3'
miRNA:   3'- -UGCgGCUCCuGGUGGUCCUG-CgCGGU- -5'
31790 3' -62.3 NC_006938.1 + 41482 0.68 0.298311
Target:  5'- uCGUCGGGGACUuugcCCAGGccgccGCGCaGCCGc -3'
miRNA:   3'- uGCGGCUCCUGGu---GGUCC-----UGCG-CGGU- -5'
31790 3' -62.3 NC_006938.1 + 26661 0.68 0.305409
Target:  5'- aACGgCGAGGGCCGCU-GGAC-CGCg- -3'
miRNA:   3'- -UGCgGCUCCUGGUGGuCCUGcGCGgu -5'
31790 3' -62.3 NC_006938.1 + 50923 0.68 0.305409
Target:  5'- -gGCCGAGGGCCuggACCGaGACuuCGCCAc -3'
miRNA:   3'- ugCGGCUCCUGG---UGGUcCUGc-GCGGU- -5'
31790 3' -62.3 NC_006938.1 + 58794 0.68 0.312637
Target:  5'- -gGCCGAGGAuUCACCAau-CGCGUCAc -3'
miRNA:   3'- ugCGGCUCCU-GGUGGUccuGCGCGGU- -5'
31790 3' -62.3 NC_006938.1 + 9204 0.67 0.349912
Target:  5'- gGCGuccuCCGAguGGACCACCcggacaucgAGGAguucauuCGCGCCAa -3'
miRNA:   3'- -UGC----GGCU--CCUGGUGG---------UCCU-------GCGCGGU- -5'
31790 3' -62.3 NC_006938.1 + 11148 0.77 0.076026
Target:  5'- cGCGCCGAGGuacuCCAUCAuGGAgaucggcuuguCGCGCCAg -3'
miRNA:   3'- -UGCGGCUCCu---GGUGGU-CCU-----------GCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.