miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31790 5' -56.3 NC_006938.1 + 5526 1.11 0.000658
Target:  5'- uGGCAGCAAUGCCAAGGCCGUCCUCGAg -3'
miRNA:   3'- -CCGUCGUUACGGUUCCGGCAGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 6791 0.8 0.100821
Target:  5'- uGGCGGCGAgGCCAAGGCCGaCCUg-- -3'
miRNA:   3'- -CCGUCGUUaCGGUUCCGGCaGGAgcu -5'
31790 5' -56.3 NC_006938.1 + 63611 0.78 0.140604
Target:  5'- gGGCAGC--UGCCAGugcGGuCCGUCCUUGAa -3'
miRNA:   3'- -CCGUCGuuACGGUU---CC-GGCAGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 40760 0.75 0.229755
Target:  5'- cGCAGCccaaccgggaccucgAcgGUGUCAAGGCCGUCCUCc- -3'
miRNA:   3'- cCGUCG---------------U--UACGGUUCCGGCAGGAGcu -5'
31790 5' -56.3 NC_006938.1 + 16966 0.75 0.233344
Target:  5'- uGCugGGCcuUGCgGAGGUCGUCCUCGGg -3'
miRNA:   3'- cCG--UCGuuACGgUUCCGGCAGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 17287 0.74 0.258494
Target:  5'- cGCGGCcauUGCCAAGGCCaUCCaCGAc -3'
miRNA:   3'- cCGUCGuu-ACGGUUCCGGcAGGaGCU- -5'
31790 5' -56.3 NC_006938.1 + 24860 0.73 0.29957
Target:  5'- uGGCGGCGAUcGCCGcgcccuucuugcuGGGCCGgaagcCCUUGGg -3'
miRNA:   3'- -CCGUCGUUA-CGGU-------------UCCGGCa----GGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 54115 0.71 0.399012
Target:  5'- cGGCAGCuuUGCCAAc-CUGUCCUCu- -3'
miRNA:   3'- -CCGUCGuuACGGUUccGGCAGGAGcu -5'
31790 5' -56.3 NC_006938.1 + 6499 0.7 0.442937
Target:  5'- -aCGGCAAUGCCGAGcgcGCUGugaucuccuucagcUCCUCGAa -3'
miRNA:   3'- ccGUCGUUACGGUUC---CGGC--------------AGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 11576 0.7 0.455561
Target:  5'- gGGCGGCAGgugGCgGAGGCCuuuggcuUCCgUCGGg -3'
miRNA:   3'- -CCGUCGUUa--CGgUUCCGGc------AGG-AGCU- -5'
31790 5' -56.3 NC_006938.1 + 38603 0.69 0.472358
Target:  5'- gGGCGGCGAUGUCcgcguaggacacuccGGCCGUCagggCGAu -3'
miRNA:   3'- -CCGUCGUUACGGuu-------------CCGGCAGga--GCU- -5'
31790 5' -56.3 NC_006938.1 + 46671 0.69 0.495566
Target:  5'- cGGCAGCuggggaGCgCGGGGCCGUgucgCCUCu- -3'
miRNA:   3'- -CCGUCGuua---CG-GUUCCGGCA----GGAGcu -5'
31790 5' -56.3 NC_006938.1 + 8929 0.69 0.525538
Target:  5'- cGCAGCuccuuguAGUGCUcuucGCCGUCCUUGAg -3'
miRNA:   3'- cCGUCG-------UUACGGuuc-CGGCAGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 39108 0.68 0.547662
Target:  5'- aGCGGCAGUGCCAuucGGCaugccaUCgUCGAc -3'
miRNA:   3'- cCGUCGUUACGGUu--CCGgc----AGgAGCU- -5'
31790 5' -56.3 NC_006938.1 + 48654 0.68 0.547662
Target:  5'- uGGaGGCGA--CCAAGGCCGUCCg-GAa -3'
miRNA:   3'- -CCgUCGUUacGGUUCCGGCAGGagCU- -5'
31790 5' -56.3 NC_006938.1 + 54409 0.68 0.558302
Target:  5'- cGCGGCcggaGUCGAGGCCaccacuGUCCUCGc -3'
miRNA:   3'- cCGUCGuua-CGGUUCCGG------CAGGAGCu -5'
31790 5' -56.3 NC_006938.1 + 17010 0.68 0.558302
Target:  5'- cGCaAGC--UGCuCGAGGCggaGUCCUCGAu -3'
miRNA:   3'- cCG-UCGuuACG-GUUCCGg--CAGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 29247 0.68 0.562574
Target:  5'- cGGUGGCAuaugacucgGCCGAGGCCccucuugugcagaucGaugUCCUCGAa -3'
miRNA:   3'- -CCGUCGUua-------CGGUUCCGG---------------C---AGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 37619 0.68 0.566855
Target:  5'- uGGCGGCcucguccagcuUGCCAGcGGCgGcggCCUCGAg -3'
miRNA:   3'- -CCGUCGuu---------ACGGUU-CCGgCa--GGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 61013 0.68 0.568999
Target:  5'- aGGaacucuGgAGUGCUGAGGUccgCGUCCUCGAa -3'
miRNA:   3'- -CCgu----CgUUACGGUUCCG---GCAGGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.