miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31790 5' -56.3 NC_006938.1 + 1337 0.67 0.623077
Target:  5'- uGGCAGCAagGCC---GCCGUCgccagagagCUCGGg -3'
miRNA:   3'- -CCGUCGUuaCGGuucCGGCAG---------GAGCU- -5'
31790 5' -56.3 NC_006938.1 + 4278 0.66 0.655685
Target:  5'- cGGCGGUcagcagggucucGAUGUCGGaGCCGUCCgccCGGa -3'
miRNA:   3'- -CCGUCG------------UUACGGUUcCGGCAGGa--GCU- -5'
31790 5' -56.3 NC_006938.1 + 5526 1.11 0.000658
Target:  5'- uGGCAGCAAUGCCAAGGCCGUCCUCGAg -3'
miRNA:   3'- -CCGUCGUUACGGUUCCGGCAGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 5589 0.68 0.590536
Target:  5'- aGCGGCGGgugGCgCGuccuGGUgGUCCUCGGc -3'
miRNA:   3'- cCGUCGUUa--CG-GUu---CCGgCAGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 6201 0.67 0.644824
Target:  5'- cGGCAuagucgccccauGCcucgGCCAGGGCCGUCuCUUc- -3'
miRNA:   3'- -CCGU------------CGuua-CGGUUCCGGCAG-GAGcu -5'
31790 5' -56.3 NC_006938.1 + 6499 0.7 0.442937
Target:  5'- -aCGGCAAUGCCGAGcgcGCUGugaucuccuucagcUCCUCGAa -3'
miRNA:   3'- ccGUCGUUACGGUUC---CGGC--------------AGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 6791 0.8 0.100821
Target:  5'- uGGCGGCGAgGCCAAGGCCGaCCUg-- -3'
miRNA:   3'- -CCGUCGUUaCGGUUCCGGCaGGAgcu -5'
31790 5' -56.3 NC_006938.1 + 6991 0.66 0.655685
Target:  5'- cGGCuggggaGGCAagGCCGGGGCCG-CUcUGAu -3'
miRNA:   3'- -CCG------UCGUuaCGGUUCCGGCaGGaGCU- -5'
31790 5' -56.3 NC_006938.1 + 7576 0.67 0.601361
Target:  5'- uGGCcaAGCAccugGCCGAGGgCGU-CUCGGg -3'
miRNA:   3'- -CCG--UCGUua--CGGUUCCgGCAgGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 8929 0.69 0.525538
Target:  5'- cGCAGCuccuuguAGUGCUcuucGCCGUCCUUGAg -3'
miRNA:   3'- cCGUCG-------UUACGGuuc-CGGCAGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 10671 0.67 0.633951
Target:  5'- aGGaCGGCAAggugGUCGAGGgCGcaaUCCUCGc -3'
miRNA:   3'- -CC-GUCGUUa---CGGUUCCgGC---AGGAGCu -5'
31790 5' -56.3 NC_006938.1 + 11576 0.7 0.455561
Target:  5'- gGGCGGCAGgugGCgGAGGCCuuuggcuUCCgUCGGg -3'
miRNA:   3'- -CCGUCGUUa--CGgUUCCGGc------AGG-AGCU- -5'
31790 5' -56.3 NC_006938.1 + 13981 0.66 0.666526
Target:  5'- uGGCgcuGGCgAAUGUagaacuCGAGGUCGUCgUCGAg -3'
miRNA:   3'- -CCG---UCG-UUACG------GUUCCGGCAGgAGCU- -5'
31790 5' -56.3 NC_006938.1 + 14619 0.68 0.590536
Target:  5'- uGGCuGGC--UGCCGAcGGUCGggaaCCUCGAg -3'
miRNA:   3'- -CCG-UCGuuACGGUU-CCGGCa---GGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 16966 0.75 0.233344
Target:  5'- uGCugGGCcuUGCgGAGGUCGUCCUCGGg -3'
miRNA:   3'- cCG--UCGuuACGgUUCCGGCAGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 17010 0.68 0.558302
Target:  5'- cGCaAGC--UGCuCGAGGCggaGUCCUCGAu -3'
miRNA:   3'- cCG-UCGuuACG-GUUCCGg--CAGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 17287 0.74 0.258494
Target:  5'- cGCGGCcauUGCCAAGGCCaUCCaCGAc -3'
miRNA:   3'- cCGUCGuu-ACGGUUCCGGcAGGaGCU- -5'
31790 5' -56.3 NC_006938.1 + 17911 0.67 0.632864
Target:  5'- ---cGC-AUGCCAuaggcgcGGGCCG-CCUCGAu -3'
miRNA:   3'- ccguCGuUACGGU-------UCCGGCaGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 18594 0.66 0.677334
Target:  5'- uGCGGC-AUGCCc-GGCgCGUCCgaggCGGc -3'
miRNA:   3'- cCGUCGuUACGGuuCCG-GCAGGa---GCU- -5'
31790 5' -56.3 NC_006938.1 + 22027 0.66 0.688101
Target:  5'- cGGCGGCAAgaUCAAGGUCGgCUaCGAg -3'
miRNA:   3'- -CCGUCGUUacGGUUCCGGCaGGaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.