Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31790 | 5' | -56.3 | NC_006938.1 | + | 17911 | 0.67 | 0.632864 |
Target: 5'- ---cGC-AUGCCAuaggcgcGGGCCG-CCUCGAu -3' miRNA: 3'- ccguCGuUACGGU-------UCCGGCaGGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 25890 | 0.67 | 0.623077 |
Target: 5'- uGGCAGCcguugGCCAcgaucguucGGGCC-UCgCUCGGg -3' miRNA: 3'- -CCGUCGuua--CGGU---------UCCGGcAG-GAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 1337 | 0.67 | 0.623077 |
Target: 5'- uGGCAGCAagGCC---GCCGUCgccagagagCUCGGg -3' miRNA: 3'- -CCGUCGUuaCGGuucCGGCAG---------GAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 7576 | 0.67 | 0.601361 |
Target: 5'- uGGCcaAGCAccugGCCGAGGgCGU-CUCGGg -3' miRNA: 3'- -CCG--UCGUua--CGGUUCCgGCAgGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 14619 | 0.68 | 0.590536 |
Target: 5'- uGGCuGGC--UGCCGAcGGUCGggaaCCUCGAg -3' miRNA: 3'- -CCG-UCGuuACGGUU-CCGGCa---GGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 5589 | 0.68 | 0.590536 |
Target: 5'- aGCGGCGGgugGCgCGuccuGGUgGUCCUCGGc -3' miRNA: 3'- cCGUCGUUa--CG-GUu---CCGgCAGGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 48494 | 0.68 | 0.590536 |
Target: 5'- aGGUguuGUAG-GCCGuGGCCG-CCUCGAu -3' miRNA: 3'- -CCGu--CGUUaCGGUuCCGGCaGGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 37918 | 0.68 | 0.579747 |
Target: 5'- gGGCGGCGAgcgggcggugGCCAGGGCgGUggaggCgUCGGc -3' miRNA: 3'- -CCGUCGUUa---------CGGUUCCGgCA-----GgAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 61013 | 0.68 | 0.568999 |
Target: 5'- aGGaacucuGgAGUGCUGAGGUccgCGUCCUCGAa -3' miRNA: 3'- -CCgu----CgUUACGGUUCCG---GCAGGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 37619 | 0.68 | 0.566855 |
Target: 5'- uGGCGGCcucguccagcuUGCCAGcGGCgGcggCCUCGAg -3' miRNA: 3'- -CCGUCGuu---------ACGGUU-CCGgCa--GGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 29247 | 0.68 | 0.562574 |
Target: 5'- cGGUGGCAuaugacucgGCCGAGGCCccucuugugcagaucGaugUCCUCGAa -3' miRNA: 3'- -CCGUCGUua-------CGGUUCCGG---------------C---AGGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 54409 | 0.68 | 0.558302 |
Target: 5'- cGCGGCcggaGUCGAGGCCaccacuGUCCUCGc -3' miRNA: 3'- cCGUCGuua-CGGUUCCGG------CAGGAGCu -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 17010 | 0.68 | 0.558302 |
Target: 5'- cGCaAGC--UGCuCGAGGCggaGUCCUCGAu -3' miRNA: 3'- cCG-UCGuuACG-GUUCCGg--CAGGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 48654 | 0.68 | 0.547662 |
Target: 5'- uGGaGGCGA--CCAAGGCCGUCCg-GAa -3' miRNA: 3'- -CCgUCGUUacGGUUCCGGCAGGagCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 39108 | 0.68 | 0.547662 |
Target: 5'- aGCGGCAGUGCCAuucGGCaugccaUCgUCGAc -3' miRNA: 3'- cCGUCGUUACGGUu--CCGgc----AGgAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 8929 | 0.69 | 0.525538 |
Target: 5'- cGCAGCuccuuguAGUGCUcuucGCCGUCCUUGAg -3' miRNA: 3'- cCGUCG-------UUACGGuuc-CGGCAGGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 46671 | 0.69 | 0.495566 |
Target: 5'- cGGCAGCuggggaGCgCGGGGCCGUgucgCCUCu- -3' miRNA: 3'- -CCGUCGuua---CG-GUUCCGGCA----GGAGcu -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 38603 | 0.69 | 0.472358 |
Target: 5'- gGGCGGCGAUGUCcgcguaggacacuccGGCCGUCagggCGAu -3' miRNA: 3'- -CCGUCGUUACGGuu-------------CCGGCAGga--GCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 11576 | 0.7 | 0.455561 |
Target: 5'- gGGCGGCAGgugGCgGAGGCCuuuggcuUCCgUCGGg -3' miRNA: 3'- -CCGUCGUUa--CGgUUCCGGc------AGG-AGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 6499 | 0.7 | 0.442937 |
Target: 5'- -aCGGCAAUGCCGAGcgcGCUGugaucuccuucagcUCCUCGAa -3' miRNA: 3'- ccGUCGUUACGGUUC---CGGC--------------AGGAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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