miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31791 5' -54.4 NC_006938.1 + 40810 0.66 0.807168
Target:  5'- aAGGAGGCCcgUgCCAagaaGCACgCC-CGAg -3'
miRNA:   3'- cUCCUCUGGuaAgGGU----UGUG-GGaGCU- -5'
31791 5' -54.4 NC_006938.1 + 982 0.66 0.797601
Target:  5'- cGAGGugucaGGGCCAUcacgaCCC--CGCCCUCGGu -3'
miRNA:   3'- -CUCC-----UCUGGUAa----GGGuuGUGGGAGCU- -5'
31791 5' -54.4 NC_006938.1 + 20237 0.66 0.793726
Target:  5'- cGGGAGACCuggugcgccucgUCCCAGCGCUgguugUCGGa -3'
miRNA:   3'- cUCCUCUGGua----------AGGGUUGUGGg----AGCU- -5'
31791 5' -54.4 NC_006938.1 + 16878 0.66 0.777962
Target:  5'- cGAGGAcGACCuccgcaaggCCCAGCACUacgCGGa -3'
miRNA:   3'- -CUCCU-CUGGuaa------GGGUUGUGGga-GCU- -5'
31791 5' -54.4 NC_006938.1 + 61912 0.66 0.767911
Target:  5'- -uGGAGACCGa---CGGCACCCUgGGc -3'
miRNA:   3'- cuCCUCUGGUaaggGUUGUGGGAgCU- -5'
31791 5' -54.4 NC_006938.1 + 38253 0.67 0.757722
Target:  5'- aGGGGAgccaagugGACCAUgccaccggcUCCCGACaaucuauacugGCCCUCGc -3'
miRNA:   3'- -CUCCU--------CUGGUA---------AGGGUUG-----------UGGGAGCu -5'
31791 5' -54.4 NC_006938.1 + 17793 0.67 0.757722
Target:  5'- -cGGAGAgCAgaagUCCAAgACCCUCa- -3'
miRNA:   3'- cuCCUCUgGUaa--GGGUUgUGGGAGcu -5'
31791 5' -54.4 NC_006938.1 + 18152 0.67 0.747404
Target:  5'- cGAGGAcGCCAUgaagaagggcaUCCUggugGACGCCCUCc- -3'
miRNA:   3'- -CUCCUcUGGUA-----------AGGG----UUGUGGGAGcu -5'
31791 5' -54.4 NC_006938.1 + 31964 0.67 0.72325
Target:  5'- cGGGGuccuucccugccacGACCGgcUCCAggACACCCUCGAc -3'
miRNA:   3'- cUCCU--------------CUGGUaaGGGU--UGUGGGAGCU- -5'
31791 5' -54.4 NC_006938.1 + 12421 0.68 0.694296
Target:  5'- -uGGGGuCCGUUgUCCAugGaCCCUCGAu -3'
miRNA:   3'- cuCCUCuGGUAA-GGGUugU-GGGAGCU- -5'
31791 5' -54.4 NC_006938.1 + 54990 0.68 0.68345
Target:  5'- uGGGAGGgCGUUCCCuggaGGCACCagggUCGGa -3'
miRNA:   3'- cUCCUCUgGUAAGGG----UUGUGGg---AGCU- -5'
31791 5' -54.4 NC_006938.1 + 42754 0.69 0.644077
Target:  5'- gGAGGugguggagccgccauAGGCUGUUCCCAgggACAUCCUCa- -3'
miRNA:   3'- -CUCC---------------UCUGGUAAGGGU---UGUGGGAGcu -5'
31791 5' -54.4 NC_006938.1 + 9417 0.69 0.61772
Target:  5'- uGGGAcugGGCCGagCCCGGCACCCuguucaUCGAc -3'
miRNA:   3'- cUCCU---CUGGUaaGGGUUGUGGG------AGCU- -5'
31791 5' -54.4 NC_006938.1 + 40235 0.69 0.606752
Target:  5'- cGGGGAGACC---CCgAACGCCCUgGc -3'
miRNA:   3'- -CUCCUCUGGuaaGGgUUGUGGGAgCu -5'
31791 5' -54.4 NC_006938.1 + 24344 0.7 0.574013
Target:  5'- -uGGAGAUCGUccagUCCCuggacggggAGCACCCUCa- -3'
miRNA:   3'- cuCCUCUGGUA----AGGG---------UUGUGGGAGcu -5'
31791 5' -54.4 NC_006938.1 + 32937 0.7 0.55241
Target:  5'- ----cGGCCAcgaugUCCCAGCuGCCCUCGAg -3'
miRNA:   3'- cuccuCUGGUa----AGGGUUG-UGGGAGCU- -5'
31791 5' -54.4 NC_006938.1 + 10806 0.71 0.499622
Target:  5'- cGGGGcgauGACCAcgCCCGACACCgUCa- -3'
miRNA:   3'- -CUCCu---CUGGUaaGGGUUGUGGgAGcu -5'
31791 5' -54.4 NC_006938.1 + 29890 0.72 0.459057
Target:  5'- -cGGAG-CCAgaUCCAGCACCCUCc- -3'
miRNA:   3'- cuCCUCuGGUaaGGGUUGUGGGAGcu -5'
31791 5' -54.4 NC_006938.1 + 8807 0.75 0.286922
Target:  5'- aGGGGAugGGCCGUgUCgCCAACGCCCUCa- -3'
miRNA:   3'- -CUCCU--CUGGUA-AG-GGUUGUGGGAGcu -5'
31791 5' -54.4 NC_006938.1 + 5646 1.09 0.001348
Target:  5'- cGAGGAGACCAUUCCCAACACCCUCGAg -3'
miRNA:   3'- -CUCCUCUGGUAAGGGUUGUGGGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.