Results 21 - 40 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 18015 | 0.67 | 0.709124 |
Target: 5'- cCGGuGCUGGU-GAGGAugcGACAGcgcGGCg -3' miRNA: 3'- aGCCuCGACCAgCUCCUc--UUGUU---CCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 52232 | 0.68 | 0.687663 |
Target: 5'- gCGGAGggcucuUUGGUgGAGGAGGugGccuguucggaGGGCu -3' miRNA: 3'- aGCCUC------GACCAgCUCCUCUugU----------UCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 41166 | 0.68 | 0.687663 |
Target: 5'- uUCGGGGgauGUCGAGGAcccggccacGGAgGAGGCg -3' miRNA: 3'- -AGCCUCgacCAGCUCCU---------CUUgUUCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 54687 | 0.68 | 0.655103 |
Target: 5'- aUGGAGCcgUGGUCuGGGAGuc--AGGCg -3' miRNA: 3'- aGCCUCG--ACCAGcUCCUCuuguUCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 62674 | 0.68 | 0.654013 |
Target: 5'- cCGGAGCaggccacUGGUCG-GGAGAugAGacggaacuccucGGCc -3' miRNA: 3'- aGCCUCG-------ACCAGCuCCUCUugUU------------CCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 26886 | 0.69 | 0.633274 |
Target: 5'- gUCGGGGCUa--CGAGGAcAAcCAGGGCa -3' miRNA: 3'- -AGCCUCGAccaGCUCCUcUU-GUUCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 23518 | 0.69 | 0.621262 |
Target: 5'- aCGG-GCcaGGUCGAGGAGcucuccgGAgAGGGCc -3' miRNA: 3'- aGCCuCGa-CCAGCUCCUC-------UUgUUCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 4158 | 0.69 | 0.600547 |
Target: 5'- --aGAGCUuGUCGGGGAGGuCGAGcGCg -3' miRNA: 3'- agcCUCGAcCAGCUCCUCUuGUUC-CG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 4304 | 0.69 | 0.589679 |
Target: 5'- gCGGAGCacGUUGAcgauGGGGAGCucGGCg -3' miRNA: 3'- aGCCUCGacCAGCU----CCUCUUGuuCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 31632 | 0.7 | 0.583174 |
Target: 5'- aUGGAcaaGCcGGUCGuGGAGcagaggcgcuuugacGACAGGGCg -3' miRNA: 3'- aGCCU---CGaCCAGCuCCUC---------------UUGUUCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 49894 | 0.7 | 0.546639 |
Target: 5'- -gGGuGCUGGUCGAaGGGu-CGAGGUg -3' miRNA: 3'- agCCuCGACCAGCUcCUCuuGUUCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 19047 | 0.7 | 0.536026 |
Target: 5'- -aGGcGGCcaUGGUCGcGGcGGACGAGGCg -3' miRNA: 3'- agCC-UCG--ACCAGCuCCuCUUGUUCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 42611 | 0.71 | 0.525485 |
Target: 5'- gUCGGGGCggugGcGUCGAuGGAGuuCGAGGg -3' miRNA: 3'- -AGCCUCGa---C-CAGCU-CCUCuuGUUCCg -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 19324 | 0.71 | 0.498466 |
Target: 5'- cCGGAGgUGGcacgguUCuucauggacgcggcgGAGGAGGGCAAGGUg -3' miRNA: 3'- aGCCUCgACC------AG---------------CUCCUCUUGUUCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 46496 | 0.71 | 0.47409 |
Target: 5'- -aGGAGCUGaUCGGcGGcGGGAUAGGGCc -3' miRNA: 3'- agCCUCGACcAGCU-CC-UCUUGUUCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 23021 | 0.72 | 0.454241 |
Target: 5'- -gGGAGCUGGagGuGGAGcACGucuGGCa -3' miRNA: 3'- agCCUCGACCagCuCCUCuUGUu--CCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 41023 | 0.75 | 0.291427 |
Target: 5'- gCGGGGCgGGUCGAGccGAGCuuGGGCu -3' miRNA: 3'- aGCCUCGaCCAGCUCcuCUUGu-UCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 3426 | 0.76 | 0.28354 |
Target: 5'- cCGGGaCUGGgUCGAGGAGGGCuucaagaAGGGCg -3' miRNA: 3'- aGCCUcGACC-AGCUCCUCUUG-------UUCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 27456 | 0.77 | 0.225865 |
Target: 5'- gCGGAGC-GGcCGAGGAGcACGAGGa -3' miRNA: 3'- aGCCUCGaCCaGCUCCUCuUGUUCCg -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 35007 | 0.78 | 0.203352 |
Target: 5'- aCGGAGCUGGacuUCGAGGAGGAgAuccGCa -3' miRNA: 3'- aGCCUCGACC---AGCUCCUCUUgUuc-CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home