Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31793 | 3' | -57.9 | NC_006938.1 | + | 6367 | 1.09 | 0.000747 |
Target: 5'- aCGAGCCGGACUCCGCGUUCGUCCAGAa -3' miRNA: 3'- -GCUCGGCCUGAGGCGCAAGCAGGUCU- -5' |
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31793 | 3' | -57.9 | NC_006938.1 | + | 25437 | 0.66 | 0.66278 |
Target: 5'- aCGAGCCGGugcACguggagCUGcCGUUCGaCCAGc -3' miRNA: 3'- -GCUCGGCC---UGa-----GGC-GCAAGCaGGUCu -5' |
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31793 | 3' | -57.9 | NC_006938.1 | + | 15864 | 0.66 | 0.620461 |
Target: 5'- aCGAGCCGGGugccgugggcUUCCGCaacgccUUCuUCCGGAa -3' miRNA: 3'- -GCUCGGCCU----------GAGGCGc-----AAGcAGGUCU- -5' |
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31793 | 3' | -57.9 | NC_006938.1 | + | 25344 | 0.68 | 0.547061 |
Target: 5'- cCGAGCCGGGuCUgCGCGUgacgCGcuUCCGc- -3' miRNA: 3'- -GCUCGGCCU-GAgGCGCAa---GC--AGGUcu -5' |
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31793 | 3' | -57.9 | NC_006938.1 | + | 34709 | 0.68 | 0.536767 |
Target: 5'- --uGCUGGACUCCGU----GUCCAGGg -3' miRNA: 3'- gcuCGGCCUGAGGCGcaagCAGGUCU- -5' |
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31793 | 3' | -57.9 | NC_006938.1 | + | 7108 | 0.69 | 0.486431 |
Target: 5'- gGAGCCGGagaggucaaGCUCCaCGagcucCGUCCGGAg -3' miRNA: 3'- gCUCGGCC---------UGAGGcGCaa---GCAGGUCU- -5' |
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31793 | 3' | -57.9 | NC_006938.1 | + | 10132 | 0.69 | 0.456369 |
Target: 5'- gGAGCggguggacgacuaCGGugUCCGCGUguucggCGUCgAGGg -3' miRNA: 3'- gCUCG-------------GCCugAGGCGCAa-----GCAGgUCU- -5' |
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31793 | 3' | -57.9 | NC_006938.1 | + | 46513 | 0.72 | 0.30516 |
Target: 5'- aGGGCCGGAgUgUGaCGUUCGUUCAGc -3' miRNA: 3'- gCUCGGCCUgAgGC-GCAAGCAGGUCu -5' |
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31793 | 3' | -57.9 | NC_006938.1 | + | 45611 | 0.66 | 0.652217 |
Target: 5'- gGAGCUGGagGCUUCGCcUUCGcugCCAGu -3' miRNA: 3'- gCUCGGCC--UGAGGCGcAAGCa--GGUCu -5' |
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31793 | 3' | -57.9 | NC_006938.1 | + | 49380 | 0.66 | 0.631048 |
Target: 5'- aCGAGCCGGuCaugCUGCccUgGUCCGGGa -3' miRNA: 3'- -GCUCGGCCuGa--GGCGcaAgCAGGUCU- -5' |
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31793 | 3' | -57.9 | NC_006938.1 | + | 62470 | 0.67 | 0.599323 |
Target: 5'- cCGAaCCGaGACUgCGCG-UCGUCCAc- -3' miRNA: 3'- -GCUcGGC-CUGAgGCGCaAGCAGGUcu -5' |
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31793 | 3' | -57.9 | NC_006938.1 | + | 48536 | 0.67 | 0.57724 |
Target: 5'- uGGGCCGGAcCUCCGCcaucuugaugcggGUgaaGUCCgAGGa -3' miRNA: 3'- gCUCGGCCU-GAGGCG-------------CAag-CAGG-UCU- -5' |
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31793 | 3' | -57.9 | NC_006938.1 | + | 16397 | 0.67 | 0.557417 |
Target: 5'- cCGAGCCGGagagcggguGCUUCGCGgg---CCAGGg -3' miRNA: 3'- -GCUCGGCC---------UGAGGCGCaagcaGGUCU- -5' |
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31793 | 3' | -57.9 | NC_006938.1 | + | 61790 | 0.69 | 0.476628 |
Target: 5'- gGAGCCGG-UUCCauucaGCG-UCGUCaCAGAg -3' miRNA: 3'- gCUCGGCCuGAGG-----CGCaAGCAG-GUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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