miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31793 5' -53.7 NC_006938.1 + 28274 0.66 0.853421
Target:  5'- cGUCUGuGgGACGGGAGUgcuguguguaggGCAgGGGc -3'
miRNA:   3'- uCAGACuUgCUGCCUUCG------------UGUgCCCu -5'
31793 5' -53.7 NC_006938.1 + 8454 0.66 0.850891
Target:  5'- cGGUgUGGGCGACGGAgccggacuggcacgAGCGC-CGaGAg -3'
miRNA:   3'- -UCAgACUUGCUGCCU--------------UCGUGuGCcCU- -5'
31793 5' -53.7 NC_006938.1 + 35141 0.66 0.836175
Target:  5'- -----cGACGGCGGAAGUgaucagACugGGGAu -3'
miRNA:   3'- ucagacUUGCUGCCUUCG------UGugCCCU- -5'
31793 5' -53.7 NC_006938.1 + 16097 0.67 0.799199
Target:  5'- aGGUCUGAGCGuCucaAGGCGCugaGGGAg -3'
miRNA:   3'- -UCAGACUUGCuGcc-UUCGUGug-CCCU- -5'
31793 5' -53.7 NC_006938.1 + 21632 0.67 0.793397
Target:  5'- --gCUGGACGGCGGugaccagggcgacguGGGCcgcGCGCGGGu -3'
miRNA:   3'- ucaGACUUGCUGCC---------------UUCG---UGUGCCCu -5'
31793 5' -53.7 NC_006938.1 + 8357 0.68 0.738752
Target:  5'- cAGaUCUGGaucgcgGCGGCGGAcGCGCAggacgcCGGGGa -3'
miRNA:   3'- -UC-AGACU------UGCUGCCUuCGUGU------GCCCU- -5'
31793 5' -53.7 NC_006938.1 + 44024 0.7 0.586852
Target:  5'- cGGUCUGGccuCGGCGGGaauggagguGGCaaccgggacugGCGCGGGAu -3'
miRNA:   3'- -UCAGACUu--GCUGCCU---------UCG-----------UGUGCCCU- -5'
31793 5' -53.7 NC_006938.1 + 18820 0.71 0.565145
Target:  5'- uGGUCgcGGGCGACGaGGGCGCGCGGc- -3'
miRNA:   3'- -UCAGa-CUUGCUGCcUUCGUGUGCCcu -5'
31793 5' -53.7 NC_006938.1 + 37014 0.75 0.367772
Target:  5'- aGGUCagGGACaGcCGGAccGGCGCGCGGGAc -3'
miRNA:   3'- -UCAGa-CUUG-CuGCCU--UCGUGUGCCCU- -5'
31793 5' -53.7 NC_006938.1 + 6401 1.09 0.001891
Target:  5'- cAGUCUGAACGACGGAAGCACACGGGAc -3'
miRNA:   3'- -UCAGACUUGCUGCCUUCGUGUGCCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.