Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31793 | 5' | -53.7 | NC_006938.1 | + | 28274 | 0.66 | 0.853421 |
Target: 5'- cGUCUGuGgGACGGGAGUgcuguguguaggGCAgGGGc -3' miRNA: 3'- uCAGACuUgCUGCCUUCG------------UGUgCCCu -5' |
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31793 | 5' | -53.7 | NC_006938.1 | + | 8454 | 0.66 | 0.850891 |
Target: 5'- cGGUgUGGGCGACGGAgccggacuggcacgAGCGC-CGaGAg -3' miRNA: 3'- -UCAgACUUGCUGCCU--------------UCGUGuGCcCU- -5' |
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31793 | 5' | -53.7 | NC_006938.1 | + | 35141 | 0.66 | 0.836175 |
Target: 5'- -----cGACGGCGGAAGUgaucagACugGGGAu -3' miRNA: 3'- ucagacUUGCUGCCUUCG------UGugCCCU- -5' |
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31793 | 5' | -53.7 | NC_006938.1 | + | 16097 | 0.67 | 0.799199 |
Target: 5'- aGGUCUGAGCGuCucaAGGCGCugaGGGAg -3' miRNA: 3'- -UCAGACUUGCuGcc-UUCGUGug-CCCU- -5' |
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31793 | 5' | -53.7 | NC_006938.1 | + | 21632 | 0.67 | 0.793397 |
Target: 5'- --gCUGGACGGCGGugaccagggcgacguGGGCcgcGCGCGGGu -3' miRNA: 3'- ucaGACUUGCUGCC---------------UUCG---UGUGCCCu -5' |
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31793 | 5' | -53.7 | NC_006938.1 | + | 8357 | 0.68 | 0.738752 |
Target: 5'- cAGaUCUGGaucgcgGCGGCGGAcGCGCAggacgcCGGGGa -3' miRNA: 3'- -UC-AGACU------UGCUGCCUuCGUGU------GCCCU- -5' |
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31793 | 5' | -53.7 | NC_006938.1 | + | 44024 | 0.7 | 0.586852 |
Target: 5'- cGGUCUGGccuCGGCGGGaauggagguGGCaaccgggacugGCGCGGGAu -3' miRNA: 3'- -UCAGACUu--GCUGCCU---------UCG-----------UGUGCCCU- -5' |
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31793 | 5' | -53.7 | NC_006938.1 | + | 18820 | 0.71 | 0.565145 |
Target: 5'- uGGUCgcGGGCGACGaGGGCGCGCGGc- -3' miRNA: 3'- -UCAGa-CUUGCUGCcUUCGUGUGCCcu -5' |
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31793 | 5' | -53.7 | NC_006938.1 | + | 37014 | 0.75 | 0.367772 |
Target: 5'- aGGUCagGGACaGcCGGAccGGCGCGCGGGAc -3' miRNA: 3'- -UCAGa-CUUG-CuGCCU--UCGUGUGCCCU- -5' |
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31793 | 5' | -53.7 | NC_006938.1 | + | 6401 | 1.09 | 0.001891 |
Target: 5'- cAGUCUGAACGACGGAAGCACACGGGAc -3' miRNA: 3'- -UCAGACUUGCUGCCUUCGUGUGCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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