Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31795 | 3' | -58.9 | NC_006938.1 | + | 575 | 0.67 | 0.474769 |
Target: 5'- gUGGGAgGCCGGuGccGagAGGCUCCGc -3' miRNA: 3'- gACCCU-CGGCCuCucCagUUCGAGGU- -5' |
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31795 | 3' | -58.9 | NC_006938.1 | + | 1827 | 0.66 | 0.528298 |
Target: 5'- cCUGGGgccaguugccaccGGCCGGAGcuguccauggcGucgucgcagauguacGGUCGAGCUCCc -3' miRNA: 3'- -GACCC-------------UCGGCCUC-----------U---------------CCAGUUCGAGGu -5' |
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31795 | 3' | -58.9 | NC_006938.1 | + | 2103 | 0.67 | 0.474769 |
Target: 5'- uUGuGGAGCCGGAcaGGGUCA--CUCCu -3' miRNA: 3'- gAC-CCUCGGCCUc-UCCAGUucGAGGu -5' |
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31795 | 3' | -58.9 | NC_006938.1 | + | 4164 | 0.72 | 0.235657 |
Target: 5'- gCUGGuaGAGCuuguCGGGGAGGUCGAGCgcgUCCu -3' miRNA: 3'- -GACC--CUCG----GCCUCUCCAGUUCG---AGGu -5' |
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31795 | 3' | -58.9 | NC_006938.1 | + | 4831 | 0.67 | 0.455277 |
Target: 5'- cCUGGcaccGGCCGaggaguucggcGAGGuGGUCGAGCUCCu -3' miRNA: 3'- -GACCc---UCGGC-----------CUCU-CCAGUUCGAGGu -5' |
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31795 | 3' | -58.9 | NC_006938.1 | + | 5571 | 0.67 | 0.484671 |
Target: 5'- gUGGGAgGCCGaGAagGAGGUCGccGCUCUc -3' miRNA: 3'- gACCCU-CGGC-CU--CUCCAGUu-CGAGGu -5' |
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31795 | 3' | -58.9 | NC_006938.1 | + | 7104 | 1.08 | 0.00061 |
Target: 5'- gCUGGGAGCCGGAGAGGUCAAGCUCCAc -3' miRNA: 3'- -GACCCUCGGCCUCUCCAGUUCGAGGU- -5' |
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31795 | 3' | -58.9 | NC_006938.1 | + | 11987 | 0.67 | 0.455277 |
Target: 5'- gUGGGAGCUGauccAGGGcGUCGAcgucGCUCCGa -3' miRNA: 3'- gACCCUCGGCc---UCUC-CAGUU----CGAGGU- -5' |
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31795 | 3' | -58.9 | NC_006938.1 | + | 13018 | 0.71 | 0.260622 |
Target: 5'- uCUGGG-GCCGGugguccaugagAGAGGUCGAGCa--- -3' miRNA: 3'- -GACCCuCGGCC-----------UCUCCAGUUCGaggu -5' |
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31795 | 3' | -58.9 | NC_006938.1 | + | 15045 | 0.68 | 0.41764 |
Target: 5'- -cGGGAGCCGG-GAuGUUGAGCgCCu -3' miRNA: 3'- gaCCCUCGGCCuCUcCAGUUCGaGGu -5' |
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31795 | 3' | -58.9 | NC_006938.1 | + | 21400 | 0.72 | 0.254186 |
Target: 5'- gUGGGAGCCGGGGAGuGgcccuUCA-GCUUCu -3' miRNA: 3'- gACCCUCGGCCUCUC-C-----AGUuCGAGGu -5' |
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31795 | 3' | -58.9 | NC_006938.1 | + | 29982 | 0.69 | 0.39069 |
Target: 5'- -cGGGAGgCGGAGGgugcuGGaUCuGGCUCCGc -3' miRNA: 3'- gaCCCUCgGCCUCU-----CC-AGuUCGAGGU- -5' |
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31795 | 3' | -58.9 | NC_006938.1 | + | 30606 | 0.66 | 0.556424 |
Target: 5'- gCUGGGAGaCCGaGGAGGUCGucgggAGCa--- -3' miRNA: 3'- -GACCCUC-GGCcUCUCCAGU-----UCGaggu -5' |
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31795 | 3' | -58.9 | NC_006938.1 | + | 32610 | 0.7 | 0.340312 |
Target: 5'- ---cGGGCCGGGGcacaacguGGUCAAGUUCCAc -3' miRNA: 3'- gaccCUCGGCCUCu-------CCAGUUCGAGGU- -5' |
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31795 | 3' | -58.9 | NC_006938.1 | + | 34523 | 0.69 | 0.372512 |
Target: 5'- uUGGaGAGCCcaaGGAGGggcggcuGGUCuGGCUCCGg -3' miRNA: 3'- gACC-CUCGG---CCUCU-------CCAGuUCGAGGU- -5' |
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31795 | 3' | -58.9 | NC_006938.1 | + | 35827 | 0.69 | 0.348373 |
Target: 5'- -cGGcGGCCGGAaGGGUCAGG-UCCAg -3' miRNA: 3'- gaCCcUCGGCCUcUCCAGUUCgAGGU- -5' |
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31795 | 3' | -58.9 | NC_006938.1 | + | 38157 | 0.73 | 0.207305 |
Target: 5'- -cGGGAGCCGGuGGcauGGUCcacuuGGCUCCc -3' miRNA: 3'- gaCCCUCGGCCuCU---CCAGu----UCGAGGu -5' |
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31795 | 3' | -58.9 | NC_006938.1 | + | 48603 | 0.66 | 0.545951 |
Target: 5'- ----cGGCCGGAacguucGAGGUCucAGGCUCCAu -3' miRNA: 3'- gacccUCGGCCU------CUCCAG--UUCGAGGU- -5' |
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31795 | 3' | -58.9 | NC_006938.1 | + | 52975 | 0.68 | 0.445694 |
Target: 5'- gCUGaGGAuCCGGucgaacGAGGUCGAGC-CCGa -3' miRNA: 3'- -GAC-CCUcGGCCu-----CUCCAGUUCGaGGU- -5' |
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31795 | 3' | -58.9 | NC_006938.1 | + | 57770 | 0.66 | 0.545951 |
Target: 5'- --uGGAGgUGGAGGGGaUCuccgaGAGCUCCGu -3' miRNA: 3'- gacCCUCgGCCUCUCC-AG-----UUCGAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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