miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31795 5' -63.8 NC_006938.1 + 6237 0.66 0.35423
Target:  5'- gUUCaGAGCGGUCCGcGUccucguagcccgugGCUCCgGCa -3'
miRNA:   3'- -AGGcCUCGCCAGGCuCG--------------CGAGGgCGa -5'
31795 5' -63.8 NC_006938.1 + 25766 0.66 0.348738
Target:  5'- cUCCGuGGUGGUCUGGGCcacCUCCCcgaGCg -3'
miRNA:   3'- -AGGCcUCGCCAGGCUCGc--GAGGG---CGa -5'
31795 5' -63.8 NC_006938.1 + 17574 0.66 0.333384
Target:  5'- cCUGGAcGCGGcCCaGGUGCU-CCGCUa -3'
miRNA:   3'- aGGCCU-CGCCaGGcUCGCGAgGGCGA- -5'
31795 5' -63.8 NC_006938.1 + 52556 0.69 0.234112
Target:  5'- gUCUGGAGCGGgaucucgCCGgucGGCGUcgUCaCCGCg -3'
miRNA:   3'- -AGGCCUCGCCa------GGC---UCGCG--AG-GGCGa -5'
31795 5' -63.8 NC_006938.1 + 48344 0.69 0.233541
Target:  5'- cCCGGcucgggcGGCGGUgaCGAGCGCgUCCUGUc -3'
miRNA:   3'- aGGCC-------UCGCCAg-GCUCGCG-AGGGCGa -5'
31795 5' -63.8 NC_006938.1 + 50425 0.7 0.20193
Target:  5'- -aUGGAGCGGUugaCCGuGCGCgcgCCaCGCUc -3'
miRNA:   3'- agGCCUCGCCA---GGCuCGCGa--GG-GCGA- -5'
31795 5' -63.8 NC_006938.1 + 41026 0.71 0.165053
Target:  5'- aUCgCGGGGCGGgucgagCCGAGCuuggGCUUgCGCUg -3'
miRNA:   3'- -AG-GCCUCGCCa-----GGCUCG----CGAGgGCGA- -5'
31795 5' -63.8 NC_006938.1 + 7139 1.07 0.000261
Target:  5'- gUCCGGAGCGGUCCGAGCGCUCCCGCUg -3'
miRNA:   3'- -AGGCCUCGCCAGGCUCGCGAGGGCGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.