miRNA display CGI


Results 21 - 40 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31796 3' -60.3 NC_006938.1 + 63050 0.67 0.417543
Target:  5'- uGCUGgGaAUACUGGCAGGaGCGuacGCCUc -3'
miRNA:   3'- gCGGCgCaUGUGACCGUUC-CGC---CGGG- -5'
31796 3' -60.3 NC_006938.1 + 46026 0.67 0.410376
Target:  5'- gGCCGCGUgggccgagauugacaGCACgacggacacccaGGUGAaucuGGUGGCCCa -3'
miRNA:   3'- gCGGCGCA---------------UGUGa-----------CCGUU----CCGCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 25886 0.68 0.399771
Target:  5'- aGCCGUuggccacgaucGUucgggccuCGCUcGGgGAGGUGGCCCa -3'
miRNA:   3'- gCGGCG-----------CAu-------GUGA-CCgUUCCGCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 14837 0.68 0.399771
Target:  5'- gCGCCaagaagGCGUAC-CUGGgGAGaGUGGCUg -3'
miRNA:   3'- -GCGG------CGCAUGuGACCgUUC-CGCCGGg -5'
31796 3' -60.3 NC_006938.1 + 53944 0.68 0.399771
Target:  5'- uGCCGCGUACACgauCGAGaCGaGUCCg -3'
miRNA:   3'- gCGGCGCAUGUGaccGUUCcGC-CGGG- -5'
31796 3' -60.3 NC_006938.1 + 30122 0.68 0.391068
Target:  5'- gGCCugGCGUuguaUGGCGAGGCcuGGCUCa -3'
miRNA:   3'- gCGG--CGCAugugACCGUUCCG--CCGGG- -5'
31796 3' -60.3 NC_006938.1 + 34241 0.68 0.391068
Target:  5'- -aCCGCGUGCucaucCUcGGCGAGGCGGaggUCa -3'
miRNA:   3'- gcGGCGCAUGu----GA-CCGUUCCGCCg--GG- -5'
31796 3' -60.3 NC_006938.1 + 39156 0.68 0.391068
Target:  5'- aCGCCagGCGUcCGCaGGCAAcGGCGGUg- -3'
miRNA:   3'- -GCGG--CGCAuGUGaCCGUU-CCGCCGgg -5'
31796 3' -60.3 NC_006938.1 + 49994 0.68 0.389342
Target:  5'- gGCCGCGcucgguccaACUGGaucgcccguguGGGUGGCCCc -3'
miRNA:   3'- gCGGCGCaug------UGACCgu---------UCCGCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 29766 0.68 0.382489
Target:  5'- aGCUGguUGUACGgcGGCAgGGGCGGCUCg -3'
miRNA:   3'- gCGGC--GCAUGUgaCCGU-UCCGCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 39349 0.68 0.369026
Target:  5'- uCGCgGCGUugGacggaccaccguuugCcGGCGAGGCGGCg- -3'
miRNA:   3'- -GCGgCGCAugU---------------GaCCGUUCCGCCGgg -5'
31796 3' -60.3 NC_006938.1 + 18387 0.68 0.365712
Target:  5'- uCGCCaGCuUGCGgagGGUgucccacuugcgGAGGCGGCCCa -3'
miRNA:   3'- -GCGG-CGcAUGUga-CCG------------UUCCGCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 7753 0.68 0.365712
Target:  5'- aGCuUGUGUAUugUGGUGgccGGGCaGCCCu -3'
miRNA:   3'- gCG-GCGCAUGugACCGU---UCCGcCGGG- -5'
31796 3' -60.3 NC_006938.1 + 11508 0.68 0.365712
Target:  5'- -uUCGCGagGCGC--GCAAGGCGGCCg -3'
miRNA:   3'- gcGGCGCa-UGUGacCGUUCCGCCGGg -5'
31796 3' -60.3 NC_006938.1 + 20224 0.68 0.357516
Target:  5'- gCGCCuCGUcccaGCGCUGGUugucGGaGGCCCa -3'
miRNA:   3'- -GCGGcGCA----UGUGACCGuu--CCgCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 37527 0.69 0.333709
Target:  5'- cCGCCGCugGCaaGCUGGaCGAGGCcGCCa -3'
miRNA:   3'- -GCGGCGcaUG--UGACC-GUUCCGcCGGg -5'
31796 3' -60.3 NC_006938.1 + 50891 0.69 0.333709
Target:  5'- gGCCgagGCGUGCucaACgccuuccGCGAGGCGGCCg -3'
miRNA:   3'- gCGG---CGCAUG---UGac-----CGUUCCGCCGGg -5'
31796 3' -60.3 NC_006938.1 + 46986 0.69 0.332935
Target:  5'- gGCgCGCGUcaccgugcgccACACgggUGGCAacgacgcugcccuGGGCGGCCg -3'
miRNA:   3'- gCG-GCGCA-----------UGUG---ACCGU-------------UCCGCCGGg -5'
31796 3' -60.3 NC_006938.1 + 23866 0.69 0.326035
Target:  5'- gGCCG-GUGCGCUGaGCGugacacCGGCCCu -3'
miRNA:   3'- gCGGCgCAUGUGAC-CGUucc---GCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 24657 0.69 0.311084
Target:  5'- aGCCGCGaGCGCgcauggccucUGGCAGcgcgcGGCGGCg- -3'
miRNA:   3'- gCGGCGCaUGUG----------ACCGUU-----CCGCCGgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.