miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31796 5' -58.5 NC_006938.1 + 25855 0.66 0.539907
Target:  5'- cGGGGaggugGCCCaGaCCACCACGGaGCAc -3'
miRNA:   3'- uUCCCga---CGGGcC-GGUGGUGUUaUGU- -5'
31796 5' -58.5 NC_006938.1 + 32137 0.66 0.518877
Target:  5'- -uGGGCuccccUGCCCGGCUcgcagACCAUgguccucaAGUGCAc -3'
miRNA:   3'- uuCCCG-----ACGGGCCGG-----UGGUG--------UUAUGU- -5'
31796 5' -58.5 NC_006938.1 + 55507 0.67 0.457956
Target:  5'- uGGGGCgagaaGCCCaGGCCGCCuGCG--GCGa -3'
miRNA:   3'- uUCCCGa----CGGG-CCGGUGG-UGUuaUGU- -5'
31796 5' -58.5 NC_006938.1 + 7219 0.67 0.448173
Target:  5'- cAGGGCcuggaGCuCCGGCgCAaCACAAUGCAc -3'
miRNA:   3'- uUCCCGa----CG-GGCCG-GUgGUGUUAUGU- -5'
31796 5' -58.5 NC_006938.1 + 19266 0.67 0.438505
Target:  5'- aGAGGcGgaGCCCGGUgACCAgAuaauGUACAu -3'
miRNA:   3'- -UUCC-CgaCGGGCCGgUGGUgU----UAUGU- -5'
31796 5' -58.5 NC_006938.1 + 29974 0.68 0.411163
Target:  5'- gGAGGGUgcuggaucuggcuccGCUCGGCCAUCACAGccGCGu -3'
miRNA:   3'- -UUCCCGa--------------CGGGCCGGUGGUGUUa-UGU- -5'
31796 5' -58.5 NC_006938.1 + 29801 0.68 0.392036
Target:  5'- gAGGGGCcaGCCCGGaCCAgauCCACAGgaucGCGu -3'
miRNA:   3'- -UUCCCGa-CGGGCC-GGU---GGUGUUa---UGU- -5'
31796 5' -58.5 NC_006938.1 + 41583 0.69 0.357245
Target:  5'- gGAGcGGCUGCgCGGCgGCCugG--GCAa -3'
miRNA:   3'- -UUC-CCGACGgGCCGgUGGugUuaUGU- -5'
31796 5' -58.5 NC_006938.1 + 18609 0.69 0.343948
Target:  5'- cGAGGGCcGCCCagaGGCCACCGucguccggccgguaGAUGCGc -3'
miRNA:   3'- -UUCCCGaCGGG---CCGGUGGUg-------------UUAUGU- -5'
31796 5' -58.5 NC_006938.1 + 57910 0.7 0.316889
Target:  5'- uGGGGaaaGCCCaGGCCACCACcagACGu -3'
miRNA:   3'- uUCCCga-CGGG-CCGGUGGUGuuaUGU- -5'
31796 5' -58.5 NC_006938.1 + 41486 0.7 0.301737
Target:  5'- cGGGGacuuUGCCCaGGCCGCCGCGcaGCc -3'
miRNA:   3'- uUCCCg---ACGGG-CCGGUGGUGUuaUGu -5'
31796 5' -58.5 NC_006938.1 + 58674 0.74 0.161643
Target:  5'- aGGGGGacagUGCCCGGCCAuCCACGA-GCGc -3'
miRNA:   3'- -UUCCCg---ACGGGCCGGU-GGUGUUaUGU- -5'
31796 5' -58.5 NC_006938.1 + 7658 1.06 0.000753
Target:  5'- gAAGGGCUGCCCGGCCACCACAAUACAc -3'
miRNA:   3'- -UUCCCGACGGGCCGGUGGUGUUAUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.