Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31796 | 5' | -58.5 | NC_006938.1 | + | 58674 | 0.74 | 0.161643 |
Target: 5'- aGGGGGacagUGCCCGGCCAuCCACGA-GCGc -3' miRNA: 3'- -UUCCCg---ACGGGCCGGU-GGUGUUaUGU- -5' |
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31796 | 5' | -58.5 | NC_006938.1 | + | 57910 | 0.7 | 0.316889 |
Target: 5'- uGGGGaaaGCCCaGGCCACCACcagACGu -3' miRNA: 3'- uUCCCga-CGGG-CCGGUGGUGuuaUGU- -5' |
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31796 | 5' | -58.5 | NC_006938.1 | + | 18609 | 0.69 | 0.343948 |
Target: 5'- cGAGGGCcGCCCagaGGCCACCGucguccggccgguaGAUGCGc -3' miRNA: 3'- -UUCCCGaCGGG---CCGGUGGUg-------------UUAUGU- -5' |
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31796 | 5' | -58.5 | NC_006938.1 | + | 41583 | 0.69 | 0.357245 |
Target: 5'- gGAGcGGCUGCgCGGCgGCCugG--GCAa -3' miRNA: 3'- -UUC-CCGACGgGCCGgUGGugUuaUGU- -5' |
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31796 | 5' | -58.5 | NC_006938.1 | + | 29974 | 0.68 | 0.411163 |
Target: 5'- gGAGGGUgcuggaucuggcuccGCUCGGCCAUCACAGccGCGu -3' miRNA: 3'- -UUCCCGa--------------CGGGCCGGUGGUGUUa-UGU- -5' |
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31796 | 5' | -58.5 | NC_006938.1 | + | 55507 | 0.67 | 0.457956 |
Target: 5'- uGGGGCgagaaGCCCaGGCCGCCuGCG--GCGa -3' miRNA: 3'- uUCCCGa----CGGG-CCGGUGG-UGUuaUGU- -5' |
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31796 | 5' | -58.5 | NC_006938.1 | + | 25855 | 0.66 | 0.539907 |
Target: 5'- cGGGGaggugGCCCaGaCCACCACGGaGCAc -3' miRNA: 3'- uUCCCga---CGGGcC-GGUGGUGUUaUGU- -5' |
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31796 | 5' | -58.5 | NC_006938.1 | + | 32137 | 0.66 | 0.518877 |
Target: 5'- -uGGGCuccccUGCCCGGCUcgcagACCAUgguccucaAGUGCAc -3' miRNA: 3'- uuCCCG-----ACGGGCCGG-----UGGUG--------UUAUGU- -5' |
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31796 | 5' | -58.5 | NC_006938.1 | + | 7219 | 0.67 | 0.448173 |
Target: 5'- cAGGGCcuggaGCuCCGGCgCAaCACAAUGCAc -3' miRNA: 3'- uUCCCGa----CG-GGCCG-GUgGUGUUAUGU- -5' |
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31796 | 5' | -58.5 | NC_006938.1 | + | 19266 | 0.67 | 0.438505 |
Target: 5'- aGAGGcGgaGCCCGGUgACCAgAuaauGUACAu -3' miRNA: 3'- -UUCC-CgaCGGGCCGgUGGUgU----UAUGU- -5' |
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31796 | 5' | -58.5 | NC_006938.1 | + | 29801 | 0.68 | 0.392036 |
Target: 5'- gAGGGGCcaGCCCGGaCCAgauCCACAGgaucGCGu -3' miRNA: 3'- -UUCCCGa-CGGGCC-GGU---GGUGUUa---UGU- -5' |
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31796 | 5' | -58.5 | NC_006938.1 | + | 41486 | 0.7 | 0.301737 |
Target: 5'- cGGGGacuuUGCCCaGGCCGCCGCGcaGCc -3' miRNA: 3'- uUCCCg---ACGGG-CCGGUGGUGUuaUGu -5' |
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31796 | 5' | -58.5 | NC_006938.1 | + | 7658 | 1.06 | 0.000753 |
Target: 5'- gAAGGGCUGCCCGGCCACCACAAUACAc -3' miRNA: 3'- -UUCCCGACGGGCCGGUGGUGUUAUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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