Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31797 | 5' | -52.9 | NC_006938.1 | + | 7753 | 1.12 | 0.001281 |
Target: 5'- aCAUGGUUCGCGACCUAAGCCAGACGCu -3' miRNA: 3'- -GUACCAAGCGCUGGAUUCGGUCUGCG- -5' |
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31797 | 5' | -52.9 | NC_006938.1 | + | 38139 | 0.74 | 0.448352 |
Target: 5'- aGUGGUgccaGCGGCCUuGGCCAucCGCu -3' miRNA: 3'- gUACCAag--CGCUGGAuUCGGUcuGCG- -5' |
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31797 | 5' | -52.9 | NC_006938.1 | + | 10876 | 0.73 | 0.478504 |
Target: 5'- aGUGGUcCGUGGCCU-GGUCAGcaaGCGCg -3' miRNA: 3'- gUACCAaGCGCUGGAuUCGGUC---UGCG- -5' |
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31797 | 5' | -52.9 | NC_006938.1 | + | 53920 | 0.73 | 0.503325 |
Target: 5'- uGUGGUcuggagCGCGGCCUcggugcccaggguGCCAGugGCu -3' miRNA: 3'- gUACCAa-----GCGCUGGAuu-----------CGGUCugCG- -5' |
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31797 | 5' | -52.9 | NC_006938.1 | + | 40133 | 0.71 | 0.596087 |
Target: 5'- gCcgGGUgUCGCGGCCgAGGUggacaugaCAGACGCu -3' miRNA: 3'- -GuaCCA-AGCGCUGGaUUCG--------GUCUGCG- -5' |
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31797 | 5' | -52.9 | NC_006938.1 | + | 50812 | 0.71 | 0.622604 |
Target: 5'- --cGGUcgcagacgucauugcUCGCaGCCUGGGUguGACGCg -3' miRNA: 3'- guaCCA---------------AGCGcUGGAUUCGguCUGCG- -5' |
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31797 | 5' | -52.9 | NC_006938.1 | + | 23252 | 0.7 | 0.629247 |
Target: 5'- aGUGGUcgGCGACC-GAGgCGGACGUc -3' miRNA: 3'- gUACCAagCGCUGGaUUCgGUCUGCG- -5' |
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31797 | 5' | -52.9 | NC_006938.1 | + | 30842 | 0.7 | 0.662427 |
Target: 5'- -----aUCGCGucuGCCUGAGCCugcaGGACGCc -3' miRNA: 3'- guaccaAGCGC---UGGAUUCGG----UCUGCG- -5' |
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31797 | 5' | -52.9 | NC_006938.1 | + | 30745 | 0.7 | 0.673444 |
Target: 5'- uGUGGaacUCuGCcACCUGAGCCAGGguCGCg -3' miRNA: 3'- gUACCa--AG-CGcUGGAUUCGGUCU--GCG- -5' |
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31797 | 5' | -52.9 | NC_006938.1 | + | 9102 | 0.7 | 0.673444 |
Target: 5'- gCAUGGUggcgGCGGCCU--GCUuGGCGCg -3' miRNA: 3'- -GUACCAag--CGCUGGAuuCGGuCUGCG- -5' |
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31797 | 5' | -52.9 | NC_006938.1 | + | 61919 | 0.69 | 0.684422 |
Target: 5'- gAUGGUgu-UGAUCUGAGCCAGGCu- -3' miRNA: 3'- gUACCAagcGCUGGAUUCGGUCUGcg -5' |
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31797 | 5' | -52.9 | NC_006938.1 | + | 38806 | 0.69 | 0.706214 |
Target: 5'- gCAUGG-UCGCGAUgaAggcGGCCuggAGACGCc -3' miRNA: 3'- -GUACCaAGCGCUGgaU---UCGG---UCUGCG- -5' |
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31797 | 5' | -52.9 | NC_006938.1 | + | 39927 | 0.69 | 0.717006 |
Target: 5'- uCGUGGggCGgGGCCac-GCuCAGugGCg -3' miRNA: 3'- -GUACCaaGCgCUGGauuCG-GUCugCG- -5' |
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31797 | 5' | -52.9 | NC_006938.1 | + | 55380 | 0.68 | 0.748826 |
Target: 5'- aCAUGcGUUCGUgaauGACCUugcGCCGgGugGCg -3' miRNA: 3'- -GUAC-CAAGCG----CUGGAuu-CGGU-CugCG- -5' |
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31797 | 5' | -52.9 | NC_006938.1 | + | 51476 | 0.68 | 0.759209 |
Target: 5'- -----gUCGCGGCCgGAGCCGGG-GCa -3' miRNA: 3'- guaccaAGCGCUGGaUUCGGUCUgCG- -5' |
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31797 | 5' | -52.9 | NC_006938.1 | + | 38039 | 0.68 | 0.759209 |
Target: 5'- --gGGUugcUCGCG-CCaGAGCC-GACGCc -3' miRNA: 3'- guaCCA---AGCGCuGGaUUCGGuCUGCG- -5' |
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31797 | 5' | -52.9 | NC_006938.1 | + | 19388 | 0.68 | 0.76024 |
Target: 5'- --aGGUUCGCGAgggcguguacaacuaCUuuGCCAGGCGg -3' miRNA: 3'- guaCCAAGCGCUg--------------GAuuCGGUCUGCg -5' |
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31797 | 5' | -52.9 | NC_006938.1 | + | 18198 | 0.67 | 0.799307 |
Target: 5'- --cGGUcaCGCGAgUUAucaGGUCGGACGCg -3' miRNA: 3'- guaCCAa-GCGCUgGAU---UCGGUCUGCG- -5' |
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31797 | 5' | -52.9 | NC_006938.1 | + | 29462 | 0.67 | 0.805094 |
Target: 5'- gCAUGcuGUUCGacgaGACCaacucucugcuGCCAGGCGCg -3' miRNA: 3'- -GUAC--CAAGCg---CUGGauu--------CGGUCUGCG- -5' |
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31797 | 5' | -52.9 | NC_006938.1 | + | 56758 | 0.67 | 0.808917 |
Target: 5'- -cUGGUUCGUcGCCc-AGUCAGGCGg -3' miRNA: 3'- guACCAAGCGcUGGauUCGGUCUGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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