miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31797 5' -52.9 NC_006938.1 + 61919 0.69 0.684422
Target:  5'- gAUGGUgu-UGAUCUGAGCCAGGCu- -3'
miRNA:   3'- gUACCAagcGCUGGAUUCGGUCUGcg -5'
31797 5' -52.9 NC_006938.1 + 9102 0.7 0.673444
Target:  5'- gCAUGGUggcgGCGGCCU--GCUuGGCGCg -3'
miRNA:   3'- -GUACCAag--CGCUGGAuuCGGuCUGCG- -5'
31797 5' -52.9 NC_006938.1 + 30745 0.7 0.673444
Target:  5'- uGUGGaacUCuGCcACCUGAGCCAGGguCGCg -3'
miRNA:   3'- gUACCa--AG-CGcUGGAUUCGGUCU--GCG- -5'
31797 5' -52.9 NC_006938.1 + 30842 0.7 0.662427
Target:  5'- -----aUCGCGucuGCCUGAGCCugcaGGACGCc -3'
miRNA:   3'- guaccaAGCGC---UGGAUUCGG----UCUGCG- -5'
31797 5' -52.9 NC_006938.1 + 23252 0.7 0.629247
Target:  5'- aGUGGUcgGCGACC-GAGgCGGACGUc -3'
miRNA:   3'- gUACCAagCGCUGGaUUCgGUCUGCG- -5'
31797 5' -52.9 NC_006938.1 + 50812 0.71 0.622604
Target:  5'- --cGGUcgcagacgucauugcUCGCaGCCUGGGUguGACGCg -3'
miRNA:   3'- guaCCA---------------AGCGcUGGAUUCGguCUGCG- -5'
31797 5' -52.9 NC_006938.1 + 40133 0.71 0.596087
Target:  5'- gCcgGGUgUCGCGGCCgAGGUggacaugaCAGACGCu -3'
miRNA:   3'- -GuaCCA-AGCGCUGGaUUCG--------GUCUGCG- -5'
31797 5' -52.9 NC_006938.1 + 53920 0.73 0.503325
Target:  5'- uGUGGUcuggagCGCGGCCUcggugcccaggguGCCAGugGCu -3'
miRNA:   3'- gUACCAa-----GCGCUGGAuu-----------CGGUCugCG- -5'
31797 5' -52.9 NC_006938.1 + 10876 0.73 0.478504
Target:  5'- aGUGGUcCGUGGCCU-GGUCAGcaaGCGCg -3'
miRNA:   3'- gUACCAaGCGCUGGAuUCGGUC---UGCG- -5'
31797 5' -52.9 NC_006938.1 + 38139 0.74 0.448352
Target:  5'- aGUGGUgccaGCGGCCUuGGCCAucCGCu -3'
miRNA:   3'- gUACCAag--CGCUGGAuUCGGUcuGCG- -5'
31797 5' -52.9 NC_006938.1 + 7753 1.12 0.001281
Target:  5'- aCAUGGUUCGCGACCUAAGCCAGACGCu -3'
miRNA:   3'- -GUACCAAGCGCUGGAUUCGGUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.