Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31798 | 5' | -55.5 | NC_006938.1 | + | 8318 | 1.12 | 0.000693 |
Target: 5'- uGCCUGUCCAAUGACCACGAGGAGGGCc -3' miRNA: 3'- -CGGACAGGUUACUGGUGCUCCUCCCG- -5' |
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31798 | 5' | -55.5 | NC_006938.1 | + | 5264 | 0.79 | 0.157211 |
Target: 5'- gGCCUGUCCAGUGGCCGa----GGGGCg -3' miRNA: 3'- -CGGACAGGUUACUGGUgcuccUCCCG- -5' |
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31798 | 5' | -55.5 | NC_006938.1 | + | 23127 | 0.77 | 0.205172 |
Target: 5'- cGCCUGUCCAggGAuCCA-GAGGAagaGGGUg -3' miRNA: 3'- -CGGACAGGUuaCU-GGUgCUCCU---CCCG- -5' |
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31798 | 5' | -55.5 | NC_006938.1 | + | 3410 | 0.76 | 0.239685 |
Target: 5'- cGCCcaacggUGUCCAccggGACUggguCGAGGAGGGCu -3' miRNA: 3'- -CGG------ACAGGUua--CUGGu---GCUCCUCCCG- -5' |
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31798 | 5' | -55.5 | NC_006938.1 | + | 18274 | 0.76 | 0.239685 |
Target: 5'- aGCUggUGUCC---GGCCGCGcGGAGGGCg -3' miRNA: 3'- -CGG--ACAGGuuaCUGGUGCuCCUCCCG- -5' |
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31798 | 5' | -55.5 | NC_006938.1 | + | 24468 | 0.74 | 0.315379 |
Target: 5'- cGCCUGcUCCAGgaugGACaCGCGcuGAGGGUg -3' miRNA: 3'- -CGGAC-AGGUUa---CUG-GUGCucCUCCCG- -5' |
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31798 | 5' | -55.5 | NC_006938.1 | + | 44542 | 0.71 | 0.464829 |
Target: 5'- cCCUGUCCAAUGcauCCGgGAuguggaugauGGAGGGa -3' miRNA: 3'- cGGACAGGUUACu--GGUgCU----------CCUCCCg -5' |
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31798 | 5' | -55.5 | NC_006938.1 | + | 3924 | 0.7 | 0.481738 |
Target: 5'- gGCCUcGUUCAA-GACCuacuucggcgugugGCG-GGAGGGCu -3' miRNA: 3'- -CGGA-CAGGUUaCUGG--------------UGCuCCUCCCG- -5' |
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31798 | 5' | -55.5 | NC_006938.1 | + | 14495 | 0.7 | 0.494866 |
Target: 5'- uCCUGUCgGA-GACCuucucCGAGGAGGaGUg -3' miRNA: 3'- cGGACAGgUUaCUGGu----GCUCCUCC-CG- -5' |
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31798 | 5' | -55.5 | NC_006938.1 | + | 61714 | 0.7 | 0.50405 |
Target: 5'- cUCUcGUCCAcaaGACCgaagucaaaccccAUGAGGAGGGCg -3' miRNA: 3'- cGGA-CAGGUua-CUGG-------------UGCUCCUCCCG- -5' |
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31798 | 5' | -55.5 | NC_006938.1 | + | 41887 | 0.69 | 0.589451 |
Target: 5'- gGCCUGUCCGuUGGCCcUGcuGuccuGGGCa -3' miRNA: 3'- -CGGACAGGUuACUGGuGCucCu---CCCG- -5' |
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31798 | 5' | -55.5 | NC_006938.1 | + | 61812 | 0.69 | 0.600233 |
Target: 5'- cGCC-GUCCcc-GuCCAgGAGGAGGGa -3' miRNA: 3'- -CGGaCAGGuuaCuGGUgCUCCUCCCg -5' |
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31798 | 5' | -55.5 | NC_006938.1 | + | 3251 | 0.68 | 0.632705 |
Target: 5'- uGCCgcccUUCAAUcACCAgGAGGAGGaGCu -3' miRNA: 3'- -CGGac--AGGUUAcUGGUgCUCCUCC-CG- -5' |
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31798 | 5' | -55.5 | NC_006938.1 | + | 52216 | 0.68 | 0.632705 |
Target: 5'- gGCCUGUUUggUGGagGC--GGAGGGCu -3' miRNA: 3'- -CGGACAGGuuACUggUGcuCCUCCCG- -5' |
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31798 | 5' | -55.5 | NC_006938.1 | + | 55821 | 0.67 | 0.674869 |
Target: 5'- cGCCUGucugggcuucgcuUCCGGUucuacGACgGCGGGGAGGa- -3' miRNA: 3'- -CGGAC-------------AGGUUA-----CUGgUGCUCCUCCcg -5' |
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31798 | 5' | -55.5 | NC_006938.1 | + | 6811 | 0.67 | 0.675944 |
Target: 5'- aCCUGUCCAcgGuCgACaAGGccgAGGGCu -3' miRNA: 3'- cGGACAGGUuaCuGgUGcUCC---UCCCG- -5' |
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31798 | 5' | -55.5 | NC_006938.1 | + | 51790 | 0.67 | 0.685608 |
Target: 5'- aGCCUGUggCCAGUGGggagccgguugacUCGCGgagcccAGaGAGGGCg -3' miRNA: 3'- -CGGACA--GGUUACU-------------GGUGC------UC-CUCCCG- -5' |
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31798 | 5' | -55.5 | NC_006938.1 | + | 15168 | 0.67 | 0.686679 |
Target: 5'- aGCCgGUgaCCAcgGuguacgagcaGCCACGGGaGAGGGUc -3' miRNA: 3'- -CGGaCA--GGUuaC----------UGGUGCUC-CUCCCG- -5' |
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31798 | 5' | -55.5 | NC_006938.1 | + | 32817 | 0.67 | 0.695231 |
Target: 5'- gGCCgacaaccccgCCAAgcUGGCCGCGuGGcucgAGGGCa -3' miRNA: 3'- -CGGaca-------GGUU--ACUGGUGCuCC----UCCCG- -5' |
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31798 | 5' | -55.5 | NC_006938.1 | + | 6134 | 0.67 | 0.697363 |
Target: 5'- uGCCggagCCAcgGGCUACGAGGAcGcGGa -3' miRNA: 3'- -CGGaca-GGUuaCUGGUGCUCCU-C-CCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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