Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31799 | 3' | -55.4 | NC_006938.1 | + | 8564 | 1.11 | 0.000882 |
Target: 5'- aUGGUCAUGGACGAGAGCCGCUCGUUCa -3' miRNA: 3'- -ACCAGUACCUGCUCUCGGCGAGCAAG- -5' |
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31799 | 3' | -55.4 | NC_006938.1 | + | 32937 | 0.75 | 0.256939 |
Target: 5'- aGGUCGUGGAagcucGA-CCGCUCGUUCg -3' miRNA: 3'- aCCAGUACCUgcu--CUcGGCGAGCAAG- -5' |
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31799 | 3' | -55.4 | NC_006938.1 | + | 35526 | 0.68 | 0.611441 |
Target: 5'- cGGaUCAUGG-CGucGAGCCacucCUCGUUCa -3' miRNA: 3'- aCC-AGUACCuGCu-CUCGGc---GAGCAAG- -5' |
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31799 | 3' | -55.4 | NC_006938.1 | + | 35213 | 0.68 | 0.633274 |
Target: 5'- aGGUCAUcucGGAcaucaagcaCGAccGUCGCUCGUUCa -3' miRNA: 3'- aCCAGUA---CCU---------GCUcuCGGCGAGCAAG- -5' |
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31799 | 3' | -55.4 | NC_006938.1 | + | 37754 | 0.68 | 0.644194 |
Target: 5'- cGGUCcuUGGAgCGGaAGCC-CUCGUUCu -3' miRNA: 3'- aCCAGu-ACCU-GCUcUCGGcGAGCAAG- -5' |
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31799 | 3' | -55.4 | NC_006938.1 | + | 18819 | 0.67 | 0.655102 |
Target: 5'- gUGGUCGcggGcGACGAGGGCgCGCggcUGUUUg -3' miRNA: 3'- -ACCAGUa--C-CUGCUCUCG-GCGa--GCAAG- -5' |
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31799 | 3' | -55.4 | NC_006938.1 | + | 21551 | 0.67 | 0.676847 |
Target: 5'- gGGUC--GGACG-GAGCgGCUCGc-- -3' miRNA: 3'- aCCAGuaCCUGCuCUCGgCGAGCaag -5' |
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31799 | 3' | -55.4 | NC_006938.1 | + | 61635 | 0.66 | 0.740731 |
Target: 5'- cGGUCuuGUGGACGAGAGUgacuuUGCcCGa-- -3' miRNA: 3'- aCCAG--UACCUGCUCUCG-----GCGaGCaag -5' |
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31799 | 3' | -55.4 | NC_006938.1 | + | 10191 | 0.66 | 0.751066 |
Target: 5'- aGGUCAcGGcCGAgGAGCaCGUggaCGUUCu -3' miRNA: 3'- aCCAGUaCCuGCU-CUCG-GCGa--GCAAG- -5' |
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31799 | 3' | -55.4 | NC_006938.1 | + | 7332 | 0.66 | 0.761281 |
Target: 5'- cUGGcuUCAUcccGGACGAGAGaCCguccugGCUCaGUUCg -3' miRNA: 3'- -ACC--AGUA---CCUGCUCUC-GG------CGAG-CAAG- -5' |
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31799 | 3' | -55.4 | NC_006938.1 | + | 8398 | 0.66 | 0.761281 |
Target: 5'- gUGGUCAuUGGACaggcaGAcGAGCCGgUCGc-- -3' miRNA: 3'- -ACCAGU-ACCUG-----CU-CUCGGCgAGCaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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