miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31799 5' -55.8 NC_006938.1 + 33666 0.66 0.706933
Target:  5'- uUGAGCcGGUGGCg--GCACGGUUg- -3'
miRNA:   3'- cGCUUGuCCACCGagaUGUGCCGGua -5'
31799 5' -55.8 NC_006938.1 + 41294 0.66 0.696165
Target:  5'- cCGGGCcGGUGGCgc--CACGGUCAa -3'
miRNA:   3'- cGCUUGuCCACCGagauGUGCCGGUa -5'
31799 5' -55.8 NC_006938.1 + 6883 0.66 0.696165
Target:  5'- cGUGGACAGGUcGGC-CUugGCcucGCCGc -3'
miRNA:   3'- -CGCUUGUCCA-CCGaGAugUGc--CGGUa -5'
31799 5' -55.8 NC_006938.1 + 46065 0.66 0.680991
Target:  5'- gGUGAAUcuGGUGGCccaggcagacgGCACGGCCGg -3'
miRNA:   3'- -CGCUUGu-CCACCGaga--------UGUGCCGGUa -5'
31799 5' -55.8 NC_006938.1 + 51399 0.67 0.663538
Target:  5'- aUGAGCuGGaccacGGC-CUGCACGGUCGUg -3'
miRNA:   3'- cGCUUGuCCa----CCGaGAUGUGCCGGUA- -5'
31799 5' -55.8 NC_006938.1 + 43249 0.67 0.65259
Target:  5'- gGCGAACAgcacGGUGGCcCUGCAgacgacUGGCUu- -3'
miRNA:   3'- -CGCUUGU----CCACCGaGAUGU------GCCGGua -5'
31799 5' -55.8 NC_006938.1 + 51597 0.67 0.641623
Target:  5'- cCGGGCAGGUuGUUCcACGCGGCgAc -3'
miRNA:   3'- cGCUUGUCCAcCGAGaUGUGCCGgUa -5'
31799 5' -55.8 NC_006938.1 + 23647 0.67 0.619673
Target:  5'- cGCGGAC-GGUGGCgcggUCUACcuCGuGCCGa -3'
miRNA:   3'- -CGCUUGuCCACCG----AGAUGu-GC-CGGUa -5'
31799 5' -55.8 NC_006938.1 + 51858 0.67 0.619673
Target:  5'- uCGAcgAGGUGGagaacCUCaACACGGCCAa -3'
miRNA:   3'- cGCUugUCCACC-----GAGaUGUGCCGGUa -5'
31799 5' -55.8 NC_006938.1 + 2088 0.67 0.60871
Target:  5'- cCGAGCAGGUGGuCUUUguggagccggACAgGGUCAc -3'
miRNA:   3'- cGCUUGUCCACC-GAGA----------UGUgCCGGUa -5'
31799 5' -55.8 NC_006938.1 + 394 0.68 0.575976
Target:  5'- gGCGAA-AGGUGGCgauuggCUugGCaGCCGUc -3'
miRNA:   3'- -CGCUUgUCCACCGa-----GAugUGcCGGUA- -5'
31799 5' -55.8 NC_006938.1 + 58906 0.68 0.565145
Target:  5'- cGCcAAC-GGUGaGCUUgACGCGGCCAUc -3'
miRNA:   3'- -CGcUUGuCCAC-CGAGaUGUGCCGGUA- -5'
31799 5' -55.8 NC_006938.1 + 47000 0.68 0.554369
Target:  5'- uGCGccacACGGGUGGCaacgacgCUGCccuggGCGGCCGa -3'
miRNA:   3'- -CGCu---UGUCCACCGa------GAUG-----UGCCGGUa -5'
31799 5' -55.8 NC_006938.1 + 11077 0.68 0.554369
Target:  5'- cGCG-ACAGGccaUGGCUCcccagACcCGGCCGa -3'
miRNA:   3'- -CGCuUGUCC---ACCGAGa----UGuGCCGGUa -5'
31799 5' -55.8 NC_006938.1 + 15872 0.7 0.431643
Target:  5'- aUGAGCGGaGUgGGCUCUgacACAcCGGCCAg -3'
miRNA:   3'- cGCUUGUC-CA-CCGAGA---UGU-GCCGGUa -5'
31799 5' -55.8 NC_006938.1 + 29105 0.71 0.422124
Target:  5'- aCGAAgAGGUGGCUCaaagagACGCGGUUc- -3'
miRNA:   3'- cGCUUgUCCACCGAGa-----UGUGCCGGua -5'
31799 5' -55.8 NC_006938.1 + 59341 0.72 0.331885
Target:  5'- cGCGGAUgacgacaacaccggAGGUGGCUCUgGCACGaCCAUc -3'
miRNA:   3'- -CGCUUG--------------UCCACCGAGA-UGUGCcGGUA- -5'
31799 5' -55.8 NC_006938.1 + 18516 0.73 0.318425
Target:  5'- cCGGACGacGGUGGcCUCUGgGCGGCCc- -3'
miRNA:   3'- cGCUUGU--CCACC-GAGAUgUGCCGGua -5'
31799 5' -55.8 NC_006938.1 + 8599 1.07 0.001322
Target:  5'- uGCGAACAGGUGGCUCUACACGGCCAUc -3'
miRNA:   3'- -CGCUUGUCCACCGAGAUGUGCCGGUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.