Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31799 | 5' | -55.8 | NC_006938.1 | + | 33666 | 0.66 | 0.706933 |
Target: 5'- uUGAGCcGGUGGCg--GCACGGUUg- -3' miRNA: 3'- cGCUUGuCCACCGagaUGUGCCGGua -5' |
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31799 | 5' | -55.8 | NC_006938.1 | + | 41294 | 0.66 | 0.696165 |
Target: 5'- cCGGGCcGGUGGCgc--CACGGUCAa -3' miRNA: 3'- cGCUUGuCCACCGagauGUGCCGGUa -5' |
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31799 | 5' | -55.8 | NC_006938.1 | + | 6883 | 0.66 | 0.696165 |
Target: 5'- cGUGGACAGGUcGGC-CUugGCcucGCCGc -3' miRNA: 3'- -CGCUUGUCCA-CCGaGAugUGc--CGGUa -5' |
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31799 | 5' | -55.8 | NC_006938.1 | + | 46065 | 0.66 | 0.680991 |
Target: 5'- gGUGAAUcuGGUGGCccaggcagacgGCACGGCCGg -3' miRNA: 3'- -CGCUUGu-CCACCGaga--------UGUGCCGGUa -5' |
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31799 | 5' | -55.8 | NC_006938.1 | + | 51399 | 0.67 | 0.663538 |
Target: 5'- aUGAGCuGGaccacGGC-CUGCACGGUCGUg -3' miRNA: 3'- cGCUUGuCCa----CCGaGAUGUGCCGGUA- -5' |
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31799 | 5' | -55.8 | NC_006938.1 | + | 43249 | 0.67 | 0.65259 |
Target: 5'- gGCGAACAgcacGGUGGCcCUGCAgacgacUGGCUu- -3' miRNA: 3'- -CGCUUGU----CCACCGaGAUGU------GCCGGua -5' |
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31799 | 5' | -55.8 | NC_006938.1 | + | 51597 | 0.67 | 0.641623 |
Target: 5'- cCGGGCAGGUuGUUCcACGCGGCgAc -3' miRNA: 3'- cGCUUGUCCAcCGAGaUGUGCCGgUa -5' |
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31799 | 5' | -55.8 | NC_006938.1 | + | 23647 | 0.67 | 0.619673 |
Target: 5'- cGCGGAC-GGUGGCgcggUCUACcuCGuGCCGa -3' miRNA: 3'- -CGCUUGuCCACCG----AGAUGu-GC-CGGUa -5' |
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31799 | 5' | -55.8 | NC_006938.1 | + | 51858 | 0.67 | 0.619673 |
Target: 5'- uCGAcgAGGUGGagaacCUCaACACGGCCAa -3' miRNA: 3'- cGCUugUCCACC-----GAGaUGUGCCGGUa -5' |
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31799 | 5' | -55.8 | NC_006938.1 | + | 2088 | 0.67 | 0.60871 |
Target: 5'- cCGAGCAGGUGGuCUUUguggagccggACAgGGUCAc -3' miRNA: 3'- cGCUUGUCCACC-GAGA----------UGUgCCGGUa -5' |
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31799 | 5' | -55.8 | NC_006938.1 | + | 394 | 0.68 | 0.575976 |
Target: 5'- gGCGAA-AGGUGGCgauuggCUugGCaGCCGUc -3' miRNA: 3'- -CGCUUgUCCACCGa-----GAugUGcCGGUA- -5' |
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31799 | 5' | -55.8 | NC_006938.1 | + | 58906 | 0.68 | 0.565145 |
Target: 5'- cGCcAAC-GGUGaGCUUgACGCGGCCAUc -3' miRNA: 3'- -CGcUUGuCCAC-CGAGaUGUGCCGGUA- -5' |
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31799 | 5' | -55.8 | NC_006938.1 | + | 47000 | 0.68 | 0.554369 |
Target: 5'- uGCGccacACGGGUGGCaacgacgCUGCccuggGCGGCCGa -3' miRNA: 3'- -CGCu---UGUCCACCGa------GAUG-----UGCCGGUa -5' |
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31799 | 5' | -55.8 | NC_006938.1 | + | 11077 | 0.68 | 0.554369 |
Target: 5'- cGCG-ACAGGccaUGGCUCcccagACcCGGCCGa -3' miRNA: 3'- -CGCuUGUCC---ACCGAGa----UGuGCCGGUa -5' |
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31799 | 5' | -55.8 | NC_006938.1 | + | 15872 | 0.7 | 0.431643 |
Target: 5'- aUGAGCGGaGUgGGCUCUgacACAcCGGCCAg -3' miRNA: 3'- cGCUUGUC-CA-CCGAGA---UGU-GCCGGUa -5' |
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31799 | 5' | -55.8 | NC_006938.1 | + | 29105 | 0.71 | 0.422124 |
Target: 5'- aCGAAgAGGUGGCUCaaagagACGCGGUUc- -3' miRNA: 3'- cGCUUgUCCACCGAGa-----UGUGCCGGua -5' |
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31799 | 5' | -55.8 | NC_006938.1 | + | 59341 | 0.72 | 0.331885 |
Target: 5'- cGCGGAUgacgacaacaccggAGGUGGCUCUgGCACGaCCAUc -3' miRNA: 3'- -CGCUUG--------------UCCACCGAGA-UGUGCcGGUA- -5' |
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31799 | 5' | -55.8 | NC_006938.1 | + | 18516 | 0.73 | 0.318425 |
Target: 5'- cCGGACGacGGUGGcCUCUGgGCGGCCc- -3' miRNA: 3'- cGCUUGU--CCACC-GAGAUgUGCCGGua -5' |
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31799 | 5' | -55.8 | NC_006938.1 | + | 8599 | 1.07 | 0.001322 |
Target: 5'- uGCGAACAGGUGGCUCUACACGGCCAUc -3' miRNA: 3'- -CGCUUGUCCACCGAGAUGUGCCGGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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