miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
318 5' -57.5 AC_000010.1 + 10520 0.66 0.456044
Target:  5'- gGCUGGAGCCGCagcuaaCGUGgUacuGGCACu -3'
miRNA:   3'- gCGACCUUGGCGa-----GCGCgAcu-CUGUG- -5'
318 5' -57.5 AC_000010.1 + 23393 0.67 0.416571
Target:  5'- gCGgaGGGcuGCUGCUC-CGCUccgGAGACAUg -3'
miRNA:   3'- -GCgaCCU--UGGCGAGcGCGA---CUCUGUG- -5'
318 5' -57.5 AC_000010.1 + 31174 0.67 0.416571
Target:  5'- cCGCUGcGGACCgaGCUCGUa-UGAGAgGCg -3'
miRNA:   3'- -GCGAC-CUUGG--CGAGCGcgACUCUgUG- -5'
318 5' -57.5 AC_000010.1 + 13627 0.67 0.407033
Target:  5'- cCGCUGGAAgaCGUaCGCGCacGAG-CACa -3'
miRNA:   3'- -GCGACCUUg-GCGaGCGCGa-CUCuGUG- -5'
318 5' -57.5 AC_000010.1 + 11126 0.68 0.326824
Target:  5'- cCGCgGGuGCCGCUCGgGCgaugGugcacccAGACGCg -3'
miRNA:   3'- -GCGaCCuUGGCGAGCgCGa---C-------UCUGUG- -5'
318 5' -57.5 AC_000010.1 + 12514 1.1 0.000276
Target:  5'- uCGCUGGAACCGCUCGCGCUGAGACACa -3'
miRNA:   3'- -GCGACCUUGGCGAGCGCGACUCUGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.