miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31800 5' -54.6 NC_006938.1 + 46679 0.66 0.784568
Target:  5'- cUCCUCgUCGGCAgcuggggaGCGCggggcCGUGUCGc -3'
miRNA:   3'- -AGGAGgAGCUGUa-------CGCGaa---GUACGGU- -5'
31800 5' -54.6 NC_006938.1 + 12170 0.66 0.784568
Target:  5'- gUUCUCgUCGGCGgugacGCGgaUCAcUGCCAg -3'
miRNA:   3'- -AGGAGgAGCUGUa----CGCgaAGU-ACGGU- -5'
31800 5' -54.6 NC_006938.1 + 4912 0.66 0.77858
Target:  5'- -aCUCCUCGGCcgGUGCcaggUCAuacuugggcaccaucUGCCc -3'
miRNA:   3'- agGAGGAGCUGuaCGCGa---AGU---------------ACGGu -5'
31800 5' -54.6 NC_006938.1 + 15368 0.66 0.754105
Target:  5'- -aCUUCUCGACGaagGCGaggUCGUGUCGa -3'
miRNA:   3'- agGAGGAGCUGUa--CGCga-AGUACGGU- -5'
31800 5' -54.6 NC_006938.1 + 24380 0.67 0.711789
Target:  5'- ---aCCUCGugGagGCGCUUguUGCCGu -3'
miRNA:   3'- aggaGGAGCugUa-CGCGAAguACGGU- -5'
31800 5' -54.6 NC_006938.1 + 28504 0.68 0.668207
Target:  5'- cUCCUCCgUGGCAaGCGCcgCucgGCCAa -3'
miRNA:   3'- -AGGAGGaGCUGUaCGCGaaGua-CGGU- -5'
31800 5' -54.6 NC_006938.1 + 63594 0.68 0.668207
Target:  5'- gUCCgUCCUUGaACGUGCGCcagUCAccGCCc -3'
miRNA:   3'- -AGG-AGGAGC-UGUACGCGa--AGUa-CGGu -5'
31800 5' -54.6 NC_006938.1 + 22551 0.68 0.657199
Target:  5'- aCCUCCgCGACAagGUGCUggucCAcGCCAa -3'
miRNA:   3'- aGGAGGaGCUGUa-CGCGAa---GUaCGGU- -5'
31800 5' -54.6 NC_006938.1 + 33409 0.69 0.59981
Target:  5'- gUCUUCCUCGACccgGCGCgcuugucggcgCGUGuCCAc -3'
miRNA:   3'- -AGGAGGAGCUGua-CGCGaa---------GUAC-GGU- -5'
31800 5' -54.6 NC_006938.1 + 40104 0.7 0.536717
Target:  5'- cUCUUCCUCGACGcggacaGCGCcggUCA-GCCGg -3'
miRNA:   3'- -AGGAGGAGCUGUa-----CGCGa--AGUaCGGU- -5'
31800 5' -54.6 NC_006938.1 + 31654 0.7 0.52605
Target:  5'- aCCUCCagcUCGACGUGUGCcaCGgaGCCAg -3'
miRNA:   3'- aGGAGG---AGCUGUACGCGaaGUa-CGGU- -5'
31800 5' -54.6 NC_006938.1 + 29727 0.74 0.319986
Target:  5'- aUCCUCCUCccCAUG-GCUUCugGUGCCAg -3'
miRNA:   3'- -AGGAGGAGcuGUACgCGAAG--UACGGU- -5'
31800 5' -54.6 NC_006938.1 + 8872 1.1 0.001137
Target:  5'- aUCCUCCUCGACAUGCGCUUCAUGCCAg -3'
miRNA:   3'- -AGGAGGAGCUGUACGCGAAGUACGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.