Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31801 | 3' | -53.9 | NC_006938.1 | + | 14238 | 0.66 | 0.824564 |
Target: 5'- --aCAcAGGCGGCCGgaggGuGCUCCGUCu -3' miRNA: 3'- caaGUaUCUGCCGGUg---C-CGAGGUAGu -5' |
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31801 | 3' | -53.9 | NC_006938.1 | + | 39539 | 0.66 | 0.804801 |
Target: 5'- aGUUCgGUGGcACGGCCACcGCUcgcacggucucggCCGUCGa -3' miRNA: 3'- -CAAG-UAUC-UGCCGGUGcCGA-------------GGUAGU- -5' |
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31801 | 3' | -53.9 | NC_006938.1 | + | 51227 | 0.66 | 0.796077 |
Target: 5'- -gUCAUugcGACGGCCAucuCGGCgCuCAUCGc -3' miRNA: 3'- caAGUAu--CUGCCGGU---GCCGaG-GUAGU- -5' |
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31801 | 3' | -53.9 | NC_006938.1 | + | 17377 | 0.66 | 0.793137 |
Target: 5'- -gUCGUGGAUGGCCuuggcaauggccgcGCGGCggaCGUUg -3' miRNA: 3'- caAGUAUCUGCCGG--------------UGCCGag-GUAGu -5' |
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31801 | 3' | -53.9 | NC_006938.1 | + | 47046 | 0.66 | 0.786219 |
Target: 5'- -cUCGUcGGCGGUCgGCGGagugUCCGUCAg -3' miRNA: 3'- caAGUAuCUGCCGG-UGCCg---AGGUAGU- -5' |
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31801 | 3' | -53.9 | NC_006938.1 | + | 24286 | 0.68 | 0.713308 |
Target: 5'- -cUCAUGGACGGCaacaaGCGcCUCCAc-- -3' miRNA: 3'- caAGUAUCUGCCGg----UGCcGAGGUagu -5' |
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31801 | 3' | -53.9 | NC_006938.1 | + | 41829 | 0.68 | 0.702474 |
Target: 5'- -gUCGggccGACGGUCAacacCGGCUCUGUCGg -3' miRNA: 3'- caAGUau--CUGCCGGU----GCCGAGGUAGU- -5' |
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31801 | 3' | -53.9 | NC_006938.1 | + | 9794 | 0.68 | 0.669599 |
Target: 5'- -----cGGAauGCCguACGGCUCCAUCGa -3' miRNA: 3'- caaguaUCUgcCGG--UGCCGAGGUAGU- -5' |
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31801 | 3' | -53.9 | NC_006938.1 | + | 55417 | 0.7 | 0.548394 |
Target: 5'- --cCGcAGGCGGCCugGGCUUC-UCGc -3' miRNA: 3'- caaGUaUCUGCCGGugCCGAGGuAGU- -5' |
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31801 | 3' | -53.9 | NC_006938.1 | + | 48404 | 0.7 | 0.548394 |
Target: 5'- -aUCG-AGGCGGCCACGGC-CUA-CAa -3' miRNA: 3'- caAGUaUCUGCCGGUGCCGaGGUaGU- -5' |
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31801 | 3' | -53.9 | NC_006938.1 | + | 52312 | 0.73 | 0.425171 |
Target: 5'- -cUCAUcGGCGGCCAgGGCggCAUCGa -3' miRNA: 3'- caAGUAuCUGCCGGUgCCGagGUAGU- -5' |
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31801 | 3' | -53.9 | NC_006938.1 | + | 58584 | 0.75 | 0.304471 |
Target: 5'- -cUCGUGGAUGGCCugGGCaCUGUCc -3' miRNA: 3'- caAGUAUCUGCCGGugCCGaGGUAGu -5' |
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31801 | 3' | -53.9 | NC_006938.1 | + | 8982 | 1.04 | 0.003193 |
Target: 5'- -gUCAUAGACGGCCACGGCUCCAUCAu -3' miRNA: 3'- caAGUAUCUGCCGGUGCCGAGGUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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