miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31801 3' -53.9 NC_006938.1 + 14238 0.66 0.824564
Target:  5'- --aCAcAGGCGGCCGgaggGuGCUCCGUCu -3'
miRNA:   3'- caaGUaUCUGCCGGUg---C-CGAGGUAGu -5'
31801 3' -53.9 NC_006938.1 + 39539 0.66 0.804801
Target:  5'- aGUUCgGUGGcACGGCCACcGCUcgcacggucucggCCGUCGa -3'
miRNA:   3'- -CAAG-UAUC-UGCCGGUGcCGA-------------GGUAGU- -5'
31801 3' -53.9 NC_006938.1 + 51227 0.66 0.796077
Target:  5'- -gUCAUugcGACGGCCAucuCGGCgCuCAUCGc -3'
miRNA:   3'- caAGUAu--CUGCCGGU---GCCGaG-GUAGU- -5'
31801 3' -53.9 NC_006938.1 + 17377 0.66 0.793137
Target:  5'- -gUCGUGGAUGGCCuuggcaauggccgcGCGGCggaCGUUg -3'
miRNA:   3'- caAGUAUCUGCCGG--------------UGCCGag-GUAGu -5'
31801 3' -53.9 NC_006938.1 + 47046 0.66 0.786219
Target:  5'- -cUCGUcGGCGGUCgGCGGagugUCCGUCAg -3'
miRNA:   3'- caAGUAuCUGCCGG-UGCCg---AGGUAGU- -5'
31801 3' -53.9 NC_006938.1 + 24286 0.68 0.713308
Target:  5'- -cUCAUGGACGGCaacaaGCGcCUCCAc-- -3'
miRNA:   3'- caAGUAUCUGCCGg----UGCcGAGGUagu -5'
31801 3' -53.9 NC_006938.1 + 41829 0.68 0.702474
Target:  5'- -gUCGggccGACGGUCAacacCGGCUCUGUCGg -3'
miRNA:   3'- caAGUau--CUGCCGGU----GCCGAGGUAGU- -5'
31801 3' -53.9 NC_006938.1 + 9794 0.68 0.669599
Target:  5'- -----cGGAauGCCguACGGCUCCAUCGa -3'
miRNA:   3'- caaguaUCUgcCGG--UGCCGAGGUAGU- -5'
31801 3' -53.9 NC_006938.1 + 55417 0.7 0.548394
Target:  5'- --cCGcAGGCGGCCugGGCUUC-UCGc -3'
miRNA:   3'- caaGUaUCUGCCGGugCCGAGGuAGU- -5'
31801 3' -53.9 NC_006938.1 + 48404 0.7 0.548394
Target:  5'- -aUCG-AGGCGGCCACGGC-CUA-CAa -3'
miRNA:   3'- caAGUaUCUGCCGGUGCCGaGGUaGU- -5'
31801 3' -53.9 NC_006938.1 + 52312 0.73 0.425171
Target:  5'- -cUCAUcGGCGGCCAgGGCggCAUCGa -3'
miRNA:   3'- caAGUAuCUGCCGGUgCCGagGUAGU- -5'
31801 3' -53.9 NC_006938.1 + 58584 0.75 0.304471
Target:  5'- -cUCGUGGAUGGCCugGGCaCUGUCc -3'
miRNA:   3'- caAGUAUCUGCCGGugCCGaGGUAGu -5'
31801 3' -53.9 NC_006938.1 + 8982 1.04 0.003193
Target:  5'- -gUCAUAGACGGCCACGGCUCCAUCAu -3'
miRNA:   3'- caAGUAUCUGCCGGUGCCGAGGUAGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.