miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31801 5' -61 NC_006938.1 + 50462 0.67 0.398368
Target:  5'- -aCGAGCGguGGCCuCCGCUcCCGUGCc -3'
miRNA:   3'- cgGUUCGU--CCGGcGGCGGuGGUACGc -5'
31801 5' -61 NC_006938.1 + 63100 0.67 0.381056
Target:  5'- gGCCGAGUAuGGCCaUgGUCACCAUcGCu -3'
miRNA:   3'- -CGGUUCGU-CCGGcGgCGGUGGUA-CGc -5'
31801 5' -61 NC_006938.1 + 32799 0.67 0.381056
Target:  5'- cGCCcagcucaagGAGCAGGCCGacaaCC-CCGCCAaGCu -3'
miRNA:   3'- -CGG---------UUCGUCCGGC----GGcGGUGGUaCGc -5'
31801 5' -61 NC_006938.1 + 50998 0.67 0.367573
Target:  5'- cGUCcuGCAGGCagucggcgcguucgaCGCUGCCACCGggGCc -3'
miRNA:   3'- -CGGuuCGUCCG---------------GCGGCGGUGGUa-CGc -5'
31801 5' -61 NC_006938.1 + 39142 0.67 0.364253
Target:  5'- uGCCAgcgacaccAGCGGuGCCGUCGuCCugCAcaGCGg -3'
miRNA:   3'- -CGGU--------UCGUC-CGGCGGC-GGugGUa-CGC- -5'
31801 5' -61 NC_006938.1 + 11496 0.68 0.356047
Target:  5'- uUCAAGUAcucGGCCGCCGUCAaccCCGUuaGCGc -3'
miRNA:   3'- cGGUUCGU---CCGGCGGCGGU---GGUA--CGC- -5'
31801 5' -61 NC_006938.1 + 51411 0.68 0.356047
Target:  5'- gGCC-GGCcaucGCCGCCGCUGCCAacaaUGCc -3'
miRNA:   3'- -CGGuUCGuc--CGGCGGCGGUGGU----ACGc -5'
31801 5' -61 NC_006938.1 + 17517 0.68 0.34797
Target:  5'- uGCCAucgacGGCGGGCCGaaGCacUACCucccgGUGCGa -3'
miRNA:   3'- -CGGU-----UCGUCCGGCggCG--GUGG-----UACGC- -5'
31801 5' -61 NC_006938.1 + 52018 0.68 0.34797
Target:  5'- cGCCGAGCccaCCGCCGCCugaccCCAgaGCGu -3'
miRNA:   3'- -CGGUUCGuccGGCGGCGGu----GGUa-CGC- -5'
31801 5' -61 NC_006938.1 + 17907 0.68 0.340026
Target:  5'- uGCCAuaggcGCGGGCCGCCuCgAUCAUGa- -3'
miRNA:   3'- -CGGUu----CGUCCGGCGGcGgUGGUACgc -5'
31801 5' -61 NC_006938.1 + 1841 0.68 0.332215
Target:  5'- cGCaccaGAGCAGGCCuggggccaGuuGCCACCG-GCc -3'
miRNA:   3'- -CGg---UUCGUCCGG--------CggCGGUGGUaCGc -5'
31801 5' -61 NC_006938.1 + 37312 0.68 0.324535
Target:  5'- uGCCAuGCAGGguuCCgGCCGuCCACCAcUGgGg -3'
miRNA:   3'- -CGGUuCGUCC---GG-CGGC-GGUGGU-ACgC- -5'
31801 5' -61 NC_006938.1 + 8379 0.68 0.324535
Target:  5'- -aCGAGCcGGUCGCCGaCCACCGggagGUc -3'
miRNA:   3'- cgGUUCGuCCGGCGGC-GGUGGUa---CGc -5'
31801 5' -61 NC_006938.1 + 46694 0.68 0.316989
Target:  5'- aGCgGAGCAGGUCGCgcuCGUcgCACCcgGCu -3'
miRNA:   3'- -CGgUUCGUCCGGCG---GCG--GUGGuaCGc -5'
31801 5' -61 NC_006938.1 + 17291 0.69 0.302294
Target:  5'- cGCgGAGguGGCagaccaGCUGgcCCACCAUGCc -3'
miRNA:   3'- -CGgUUCguCCGg-----CGGC--GGUGGUACGc -5'
31801 5' -61 NC_006938.1 + 38714 0.69 0.288131
Target:  5'- cGUCuc-CAGGCCGCCuucaucGCgACCAUGCa -3'
miRNA:   3'- -CGGuucGUCCGGCGG------CGgUGGUACGc -5'
31801 5' -61 NC_006938.1 + 50089 0.7 0.267872
Target:  5'- cGCCAAcGCucAGGCCGCgaucguCGCCGCCGaggGUGu -3'
miRNA:   3'- -CGGUU-CG--UCCGGCG------GCGGUGGUa--CGC- -5'
31801 5' -61 NC_006938.1 + 37169 0.7 0.267872
Target:  5'- cGCCAcuAGC--GCCGCCGCUcCCAUGgGc -3'
miRNA:   3'- -CGGU--UCGucCGGCGGCGGuGGUACgC- -5'
31801 5' -61 NC_006938.1 + 20439 0.7 0.261379
Target:  5'- uGCCuGGCGGGCgGaCGCUGCCAggUGCu -3'
miRNA:   3'- -CGGuUCGUCCGgCgGCGGUGGU--ACGc -5'
31801 5' -61 NC_006938.1 + 5577 0.7 0.255015
Target:  5'- gGCCGAGaaggAGGUCGCCGCUcucgagGCCAaGCu -3'
miRNA:   3'- -CGGUUCg---UCCGGCGGCGG------UGGUaCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.