Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31802 | 3' | -55.4 | NC_006938.1 | + | 41067 | 0.66 | 0.699507 |
Target: 5'- cGCCUCcuccgugGCCGGGUccUCGACAuCCcCCGa -3' miRNA: 3'- uUGGAG-------UGGCCCA--AGUUGU-GGaGGUa -5' |
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31802 | 3' | -55.4 | NC_006938.1 | + | 21461 | 0.66 | 0.700596 |
Target: 5'- gGACCUCGgCGGGgaCcACugCUUCAa -3' miRNA: 3'- -UUGGAGUgGCCCaaGuUGugGAGGUa -5' |
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31802 | 3' | -55.4 | NC_006938.1 | + | 47474 | 0.66 | 0.722226 |
Target: 5'- cGCCUcCGgUGGGUUCAACcaggACCUCaCAUu -3' miRNA: 3'- uUGGA-GUgGCCCAAGUUG----UGGAG-GUA- -5' |
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31802 | 3' | -55.4 | NC_006938.1 | + | 57495 | 0.66 | 0.700596 |
Target: 5'- cACCUC-CUGGGUgc-GCugCUCCGg -3' miRNA: 3'- uUGGAGuGGCCCAaguUGugGAGGUa -5' |
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31802 | 3' | -55.4 | NC_006938.1 | + | 30258 | 0.68 | 0.546418 |
Target: 5'- uACCUCAUCGGGg-CGAuCugCUCCGg -3' miRNA: 3'- uUGGAGUGGCCCaaGUU-GugGAGGUa -5' |
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31802 | 3' | -55.4 | NC_006938.1 | + | 12718 | 0.68 | 0.601188 |
Target: 5'- cGCCUCuACCGGGagaugUCGGCGacgucaCUCCAg -3' miRNA: 3'- uUGGAG-UGGCCCa----AGUUGUg-----GAGGUa -5' |
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31802 | 3' | -55.4 | NC_006938.1 | + | 12885 | 0.7 | 0.482996 |
Target: 5'- aGGCgCUCGCCGGGgccUCuccCGCCUCCu- -3' miRNA: 3'- -UUG-GAGUGGCCCa--AGuu-GUGGAGGua -5' |
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31802 | 3' | -55.4 | NC_006938.1 | + | 9266 | 1.03 | 0.002562 |
Target: 5'- cAACCUCACCGGGUUCAACACCUCCAUc -3' miRNA: 3'- -UUGGAGUGGCCCAAGUUGUGGAGGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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