Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31803 | 3' | -55.2 | NC_006938.1 | + | 41391 | 0.66 | 0.737406 |
Target: 5'- uGGCGUcugUGUUGACCguGGcGCCAcCgGCCCg -3' miRNA: 3'- -UUGCA---ACAGCUGG--CC-CGGUaGaUGGG- -5' |
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31803 | 3' | -55.2 | NC_006938.1 | + | 33522 | 0.66 | 0.747747 |
Target: 5'- --aGUUGUCcaugacgaacaGACCGGGCU-UCU-CCCu -3' miRNA: 3'- uugCAACAG-----------CUGGCCCGGuAGAuGGG- -5' |
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31803 | 3' | -55.2 | NC_006938.1 | + | 49566 | 0.67 | 0.726961 |
Target: 5'- aGACGgugucGUCGACgGcGGCCGacuggaUCUugCCg -3' miRNA: 3'- -UUGCaa---CAGCUGgC-CCGGU------AGAugGG- -5' |
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31803 | 3' | -55.2 | NC_006938.1 | + | 47962 | 0.67 | 0.726961 |
Target: 5'- gAACGUggucggGUCGGCCGuGGUCGaCUGCa- -3' miRNA: 3'- -UUGCAa-----CAGCUGGC-CCGGUaGAUGgg -5' |
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31803 | 3' | -55.2 | NC_006938.1 | + | 61066 | 0.67 | 0.713246 |
Target: 5'- -cCGcugUGUCGauGCUGGGCCAgguguuggcguuccUCUGCUCg -3' miRNA: 3'- uuGCa--ACAGC--UGGCCCGGU--------------AGAUGGG- -5' |
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31803 | 3' | -55.2 | NC_006938.1 | + | 59516 | 0.67 | 0.673568 |
Target: 5'- uGGCGaaGUCGGCCGGGuCCGgcgGCgCCa -3' miRNA: 3'- -UUGCaaCAGCUGGCCC-GGUagaUG-GG- -5' |
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31803 | 3' | -55.2 | NC_006938.1 | + | 8296 | 0.68 | 0.630096 |
Target: 5'- gGugGUcGgCGACCGGcUCGUCUGCCUg -3' miRNA: 3'- -UugCAaCaGCUGGCCcGGUAGAUGGG- -5' |
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31803 | 3' | -55.2 | NC_006938.1 | + | 18723 | 0.68 | 0.656216 |
Target: 5'- gGugGUUGUcCGuguCCGGGUCGUCUcgguacuucugcgccGCCUc -3' miRNA: 3'- -UugCAACA-GCu--GGCCCGGUAGA---------------UGGG- -5' |
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31803 | 3' | -55.2 | NC_006938.1 | + | 17181 | 0.69 | 0.608331 |
Target: 5'- uGACGgugaugGUCGGCaugguGGGCCAgcuggUCUGCCa -3' miRNA: 3'- -UUGCaa----CAGCUGg----CCCGGU-----AGAUGGg -5' |
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31803 | 3' | -55.2 | NC_006938.1 | + | 58451 | 0.7 | 0.537438 |
Target: 5'- gGACGUcaacgcggagaccuuUGUCGGCCuGGCCAgggACCUg -3' miRNA: 3'- -UUGCA---------------ACAGCUGGcCCGGUagaUGGG- -5' |
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31803 | 3' | -55.2 | NC_006938.1 | + | 10716 | 0.71 | 0.481633 |
Target: 5'- uGACGgUGUCGGgCGuGGUCAUCgcCCCg -3' miRNA: 3'- -UUGCaACAGCUgGC-CCGGUAGauGGG- -5' |
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31803 | 3' | -55.2 | NC_006938.1 | + | 46174 | 0.72 | 0.423129 |
Target: 5'- gGAUGUcGUuucCGGCCGuGCCGUCUGCCUg -3' miRNA: 3'- -UUGCAaCA---GCUGGCcCGGUAGAUGGG- -5' |
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31803 | 3' | -55.2 | NC_006938.1 | + | 9683 | 1.1 | 0.001034 |
Target: 5'- cAACGUUGUCGACCGGGCCAUCUACCCg -3' miRNA: 3'- -UUGCAACAGCUGGCCCGGUAGAUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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