miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31804 5' -58.7 NC_006938.1 + 5437 0.66 0.612968
Target:  5'- -aAGGAGGACucugucauggccucuGUCGGCUGgUGauGGAc -3'
miRNA:   3'- ggUCCUCCUG---------------UAGCCGGCgAUgcCCU- -5'
31804 5' -58.7 NC_006938.1 + 23000 0.66 0.587738
Target:  5'- aCCcGGAGGA---CGGCUGgUcGCGGGAg -3'
miRNA:   3'- -GGuCCUCCUguaGCCGGCgA-UGCCCU- -5'
31804 5' -58.7 NC_006938.1 + 12133 0.66 0.584596
Target:  5'- uUCAGGGcGGACuucCGGCCGgUGCucugcgacuuggugGGGAu -3'
miRNA:   3'- -GGUCCU-CCUGua-GCCGGCgAUG--------------CCCU- -5'
31804 5' -58.7 NC_006938.1 + 20351 0.66 0.577277
Target:  5'- gCAGGuGGACAgcuGGCCGgUccGCGaGGAc -3'
miRNA:   3'- gGUCCuCCUGUag-CCGGCgA--UGC-CCU- -5'
31804 5' -58.7 NC_006938.1 + 45663 0.67 0.556487
Target:  5'- gCCGGGAGGcCGagaaCGGCUGgaGCGGa- -3'
miRNA:   3'- -GGUCCUCCuGUa---GCCGGCgaUGCCcu -5'
31804 5' -58.7 NC_006938.1 + 21165 0.67 0.525734
Target:  5'- gCCGGaAGGugGUcgucgugaucCGGCCGUU-CGGGAc -3'
miRNA:   3'- -GGUCcUCCugUA----------GCCGGCGAuGCCCU- -5'
31804 5' -58.7 NC_006938.1 + 18687 0.68 0.446402
Target:  5'- uCCAGGaAGGAggccaagauCAUCuuccuugGGCUcuGCUACGGGAu -3'
miRNA:   3'- -GGUCC-UCCU---------GUAG-------CCGG--CGAUGCCCU- -5'
31804 5' -58.7 NC_006938.1 + 8895 0.7 0.384383
Target:  5'- gCCAGcGGGccGCGUCcaGGCCGCcAUGGGAu -3'
miRNA:   3'- -GGUCcUCC--UGUAG--CCGGCGaUGCCCU- -5'
31804 5' -58.7 NC_006938.1 + 46897 0.7 0.359257
Target:  5'- -gAGGAuccGGACGUCGGCgGgCUGCaGGAu -3'
miRNA:   3'- ggUCCU---CCUGUAGCCGgC-GAUGcCCU- -5'
31804 5' -58.7 NC_006938.1 + 31802 0.72 0.298019
Target:  5'- gCAGGAGGcGCAcaacgacuggcUCGaGCUGCUggaGCGGGAg -3'
miRNA:   3'- gGUCCUCC-UGU-----------AGC-CGGCGA---UGCCCU- -5'
31804 5' -58.7 NC_006938.1 + 21646 0.77 0.124908
Target:  5'- aCCAGGGcGACGUgGGCCGCgcGCGGGu -3'
miRNA:   3'- -GGUCCUcCUGUAgCCGGCGa-UGCCCu -5'
31804 5' -58.7 NC_006938.1 + 9970 1.01 0.002334
Target:  5'- uCCAGGAGGAC-UCGGCCGCUACGGGAu -3'
miRNA:   3'- -GGUCCUCCUGuAGCCGGCGAUGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.