Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31805 | 3' | -60.1 | NC_006938.1 | + | 1890 | 0.68 | 0.357786 |
Target: 5'- gCCACGGCGCGCUa--UGAgCcGGCa- -3' miRNA: 3'- -GGUGCCGCGCGAacgACUgGuCCGgu -5' |
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31805 | 3' | -60.1 | NC_006938.1 | + | 2437 | 0.68 | 0.366043 |
Target: 5'- gCACGGgGaaCGCUgGCUgGACgAGGCCGa -3' miRNA: 3'- gGUGCCgC--GCGAaCGA-CUGgUCCGGU- -5' |
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31805 | 3' | -60.1 | NC_006938.1 | + | 7189 | 0.66 | 0.504457 |
Target: 5'- aCAagaGaGCGCGUccgcGUUGACCAGGCgCAg -3' miRNA: 3'- gGUg--C-CGCGCGaa--CGACUGGUCCG-GU- -5' |
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31805 | 3' | -60.1 | NC_006938.1 | + | 7271 | 0.66 | 0.494479 |
Target: 5'- aCGCGGaCGCGCUcucuUGUgaGCUcGGCCAu -3' miRNA: 3'- gGUGCC-GCGCGA----ACGacUGGuCCGGU- -5' |
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31805 | 3' | -60.1 | NC_006938.1 | + | 9661 | 0.7 | 0.269054 |
Target: 5'- aCGCGGUcguccGCGCcauggacaacgUUGUcGACCGGGCCAu -3' miRNA: 3'- gGUGCCG-----CGCG-----------AACGaCUGGUCCGGU- -5' |
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31805 | 3' | -60.1 | NC_006938.1 | + | 10779 | 1.1 | 0.00035 |
Target: 5'- aCCACGGCGCGCUUGCUGACCAGGCCAc -3' miRNA: 3'- -GGUGCCGCGCGAACGACUGGUCCGGU- -5' |
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31805 | 3' | -60.1 | NC_006938.1 | + | 11103 | 0.68 | 0.374431 |
Target: 5'- gUACGGCGCGUauUUGaUGGCaccgucgcgaCAGGCCAu -3' miRNA: 3'- gGUGCCGCGCG--AACgACUG----------GUCCGGU- -5' |
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31805 | 3' | -60.1 | NC_006938.1 | + | 19749 | 0.72 | 0.204117 |
Target: 5'- aCGCGGUGCGgaaggcGCUGgacaACCGGGCCAa -3' miRNA: 3'- gGUGCCGCGCgaa---CGAC----UGGUCCGGU- -5' |
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31805 | 3' | -60.1 | NC_006938.1 | + | 20452 | 0.68 | 0.391594 |
Target: 5'- -aGCGGCGUGUccucGCgGACC-GGCCAg -3' miRNA: 3'- ggUGCCGCGCGaa--CGaCUGGuCCGGU- -5' |
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31805 | 3' | -60.1 | NC_006938.1 | + | 22246 | 0.67 | 0.412853 |
Target: 5'- gCCACaGGCGUacaaccuguggaaggGCUUcGCcuGCCAGGCCGu -3' miRNA: 3'- -GGUG-CCGCG---------------CGAA-CGacUGGUCCGGU- -5' |
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31805 | 3' | -60.1 | NC_006938.1 | + | 23795 | 0.67 | 0.412853 |
Target: 5'- cUCAgGGCGCGCUcgagcaucucggccaUGCcGcCCuGGCCGa -3' miRNA: 3'- -GGUgCCGCGCGA---------------ACGaCuGGuCCGGU- -5' |
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31805 | 3' | -60.1 | NC_006938.1 | + | 25903 | 0.66 | 0.504457 |
Target: 5'- cUCGCGGaCGUGCUggcagccGUUGGCCacgaucguucGGGCCu -3' miRNA: 3'- -GGUGCC-GCGCGAa------CGACUGG----------UCCGGu -5' |
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31805 | 3' | -60.1 | NC_006938.1 | + | 26018 | 0.66 | 0.465108 |
Target: 5'- aCGCGGCGaugaagacaGCa--CUGcCCAGGCCAg -3' miRNA: 3'- gGUGCCGCg--------CGaacGACuGGUCCGGU- -5' |
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31805 | 3' | -60.1 | NC_006938.1 | + | 27084 | 0.67 | 0.427416 |
Target: 5'- aCGCGGUGUGUUccucgUGUcGGucCCAGGCCAc -3' miRNA: 3'- gGUGCCGCGCGA-----ACGaCU--GGUCCGGU- -5' |
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31805 | 3' | -60.1 | NC_006938.1 | + | 29718 | 0.66 | 0.504457 |
Target: 5'- cCCAUGGCuucugGUGCcagcggGCgcggGugCAGGCCGg -3' miRNA: 3'- -GGUGCCG-----CGCGaa----CGa---CugGUCCGGU- -5' |
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31805 | 3' | -60.1 | NC_006938.1 | + | 32800 | 0.66 | 0.4748 |
Target: 5'- aCGCGGCagaGCuGCUUGCgGAUCGGcucGCCGg -3' miRNA: 3'- gGUGCCG---CG-CGAACGaCUGGUC---CGGU- -5' |
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31805 | 3' | -60.1 | NC_006938.1 | + | 33399 | 0.66 | 0.504457 |
Target: 5'- aCC-CGGCGCGCUUGUcGGCgCGuGuCCAc -3' miRNA: 3'- -GGuGCCGCGCGAACGaCUG-GUcC-GGU- -5' |
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31805 | 3' | -60.1 | NC_006938.1 | + | 37026 | 0.7 | 0.282514 |
Target: 5'- gCCGgacCGGCGCGCggGacaUGACCcGGCCc -3' miRNA: 3'- -GGU---GCCGCGCGaaCg--ACUGGuCCGGu -5' |
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31805 | 3' | -60.1 | NC_006938.1 | + | 37919 | 0.66 | 0.484591 |
Target: 5'- -gGCGGCGaGCggGCggUGGCCAGGgCGg -3' miRNA: 3'- ggUGCCGCgCGaaCG--ACUGGUCCgGU- -5' |
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31805 | 3' | -60.1 | NC_006938.1 | + | 39904 | 0.66 | 0.484591 |
Target: 5'- aCCACGGaGaCGCUcGCUucggcucguggGGCgGGGCCAc -3' miRNA: 3'- -GGUGCCgC-GCGAaCGA-----------CUGgUCCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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