miRNA: 3'- -GGUGCCGCGCGAacgACUgGuCCGgu -5'
miRNA: 3'- -GGU---GCCGCGCGaaCg--ACUGGuCCGGu -5'
miRNA: 3'- gGUGCCG-----CGCG-----------AACGaCUGGUCCGGU- -5'
miRNA: 3'- gGUGCCGCGCgaa---CGAC----UGGUCCGGU- -5'
miRNA: 3'- -GGUGCCGCGCGAACGACUGGUCCGGU- -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31805 | 3' | -60.1 | NC_006938.1 | + | 1890 | 0.68 | 0.357786 |
|
Target: 5'- gCCACGGCGCGCUa--UGAgCcGGCa- -3' miRNA: 3'- -GGUGCCGCGCGAacgACUgGuCCGgu -5' |
|||||||
| 31805 | 3' | -60.1 | NC_006938.1 | + | 37026 | 0.7 | 0.282514 |
|
Target: 5'- gCCGgacCGGCGCGCggGacaUGACCcGGCCc -3' miRNA: 3'- -GGU---GCCGCGCGaaCg--ACUGGuCCGGu -5' |
|||||||
| 31805 | 3' | -60.1 | NC_006938.1 | + | 9661 | 0.7 | 0.269054 |
|
Target: 5'- aCGCGGUcguccGCGCcauggacaacgUUGUcGACCGGGCCAu -3' miRNA: 3'- gGUGCCG-----CGCG-----------AACGaCUGGUCCGGU- -5' |
|||||||
| 31805 | 3' | -60.1 | NC_006938.1 | + | 19749 | 0.72 | 0.204117 |
|
Target: 5'- aCGCGGUGCGgaaggcGCUGgacaACCGGGCCAa -3' miRNA: 3'- gGUGCCGCGCgaa---CGAC----UGGUCCGGU- -5' |
|||||||
| 31805 | 3' | -60.1 | NC_006938.1 | + | 10779 | 1.1 | 0.00035 |
|
Target: 5'- aCCACGGCGCGCUUGCUGACCAGGCCAc -3' miRNA: 3'- -GGUGCCGCGCGAACGACUGGUCCGGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home