miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31805 5' -53.7 NC_006938.1 + 5616 0.66 0.837243
Target:  5'- cUCGAGGAcGGccUUGGCAuugcugccagcggcgGGugGCGCGu -3'
miRNA:   3'- aAGCUCUU-CU--AGCCGU---------------UCugCGCGCu -5'
31805 5' -53.7 NC_006938.1 + 36551 0.66 0.833663
Target:  5'- -gCGAGAc-GUCGGCGuucCGCGCGGc -3'
miRNA:   3'- aaGCUCUucUAGCCGUucuGCGCGCU- -5'
31805 5' -53.7 NC_006938.1 + 1645 0.66 0.824564
Target:  5'- -cCGAGguGGUUGGCGuacguGACGaGCGAg -3'
miRNA:   3'- aaGCUCuuCUAGCCGUu----CUGCgCGCU- -5'
31805 5' -53.7 NC_006938.1 + 52761 0.66 0.805761
Target:  5'- ------cGGAaCGGCAGGGCGCGUGGc -3'
miRNA:   3'- aagcucuUCUaGCCGUUCUGCGCGCU- -5'
31805 5' -53.7 NC_006938.1 + 20807 0.67 0.790182
Target:  5'- -aCGAGAAgugccuGAUCuaccgccgccgcgcgGGCAAGACacaGCGCGAg -3'
miRNA:   3'- aaGCUCUU------CUAG---------------CCGUUCUG---CGCGCU- -5'
31805 5' -53.7 NC_006938.1 + 24144 0.67 0.786219
Target:  5'- -gCGAGAgaucaAGAUCGGCGAcGugGUccgugugaccauGCGAg -3'
miRNA:   3'- aaGCUCU-----UCUAGCCGUU-CugCG------------CGCU- -5'
31805 5' -53.7 NC_006938.1 + 14013 0.67 0.786219
Target:  5'- gUCGAGcacGUCGGCAuaucGGGC-CGCGAg -3'
miRNA:   3'- aAGCUCuucUAGCCGU----UCUGcGCGCU- -5'
31805 5' -53.7 NC_006938.1 + 8759 0.67 0.766027
Target:  5'- --aGAGuAG-UCGGUggGAuCGCGCGGg -3'
miRNA:   3'- aagCUCuUCuAGCCGuuCU-GCGCGCU- -5'
31805 5' -53.7 NC_006938.1 + 8281 0.67 0.766027
Target:  5'- ---aAGcuGGUCGGCucGACGUGCGAu -3'
miRNA:   3'- aagcUCuuCUAGCCGuuCUGCGCGCU- -5'
31805 5' -53.7 NC_006938.1 + 45179 0.67 0.755716
Target:  5'- gUCGAGGcacAGAUCcGCAuAGACaaugGCGCGAc -3'
miRNA:   3'- aAGCUCU---UCUAGcCGU-UCUG----CGCGCU- -5'
31805 5' -53.7 NC_006938.1 + 37255 0.68 0.702474
Target:  5'- -aUGGGAGcGG-CGGCGcuAGugGCGCGAc -3'
miRNA:   3'- aaGCUCUU-CUaGCCGU--UCugCGCGCU- -5'
31805 5' -53.7 NC_006938.1 + 19140 0.69 0.669599
Target:  5'- -cCGAGAAGAUCGcCGAGAucaugcggaccUGCGUGGa -3'
miRNA:   3'- aaGCUCUUCUAGCcGUUCU-----------GCGCGCU- -5'
31805 5' -53.7 NC_006938.1 + 24051 0.69 0.636402
Target:  5'- -aCGAGccgGAGAagGGCAAGGaGCGCGGc -3'
miRNA:   3'- aaGCUC---UUCUagCCGUUCUgCGCGCU- -5'
31805 5' -53.7 NC_006938.1 + 16400 0.69 0.636402
Target:  5'- cUCGAGccGAUCGaGCucGACGUGCuGAa -3'
miRNA:   3'- aAGCUCuuCUAGC-CGuuCUGCGCG-CU- -5'
31805 5' -53.7 NC_006938.1 + 11259 0.7 0.614233
Target:  5'- gUCGAGGAGGaUGGCGgcGGugGCGaUGAu -3'
miRNA:   3'- aAGCUCUUCUaGCCGU--UCugCGC-GCU- -5'
31805 5' -53.7 NC_006938.1 + 46292 0.7 0.614233
Target:  5'- -aCGAGAaugccGGAUCGGUuGGucaggcccGCGCGCGGa -3'
miRNA:   3'- aaGCUCU-----UCUAGCCGuUC--------UGCGCGCU- -5'
31805 5' -53.7 NC_006938.1 + 39652 0.7 0.570159
Target:  5'- -cCGAGAAGucgaCGGcCGAGAcCGUGCGAg -3'
miRNA:   3'- aaGCUCUUCua--GCC-GUUCU-GCGCGCU- -5'
31805 5' -53.7 NC_006938.1 + 16468 0.72 0.454515
Target:  5'- cUCGAGGu--UCGGCGAGAUguacaGCGCGGc -3'
miRNA:   3'- aAGCUCUucuAGCCGUUCUG-----CGCGCU- -5'
31805 5' -53.7 NC_006938.1 + 10813 1.07 0.002293
Target:  5'- cUUCGAGAAGAUCGGCAAGACGCGCGAg -3'
miRNA:   3'- -AAGCUCUUCUAGCCGUUCUGCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.